Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AVFI_RS01795 Genome accession   NZ_CP092712
Coordinates   393569..394102 (+) Length   177 a.a.
NCBI ID   WP_054775770.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 388569..399102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS01780 (AVFI_01780) - 389956..390543 (-) 588 WP_054775768.1 polysaccharide biosynthesis/export family protein -
  AVFI_RS01785 (AVFI_01785) - 390544..391860 (-) 1317 WP_188863666.1 outer membrane beta-barrel protein -
  AVFI_RS01790 (AVFI_01790) - 391844..393256 (-) 1413 WP_054775769.1 undecaprenyl-phosphate glucose phosphotransferase -
  AVFI_RS01795 (AVFI_01795) ssb 393569..394102 (+) 534 WP_054775770.1 single-stranded DNA-binding protein Machinery gene
  AVFI_RS01800 (AVFI_01800) - 394187..394495 (-) 309 WP_236783576.1 hypothetical protein -
  AVFI_RS01805 (AVFI_01805) - 394453..394875 (-) 423 WP_236782089.1 hypothetical protein -
  AVFI_RS01810 (AVFI_01810) csrD 395080..397059 (+) 1980 WP_188863667.1 RNase E specificity factor CsrD -
  AVFI_RS01815 (AVFI_01815) - 397179..398642 (+) 1464 WP_155662634.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19523.58 Da        Isoelectric Point: 4.9269

>NTDB_id=659767 AVFI_RS01795 WP_054775770.1 393569..394102(+) (ssb) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MASRGVNKVILVGNLGQDPEIRYMPSGGAVANITIATSETWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQNGQDRFTTEVVVQGFNGVMQMLGGRGQGAPAGGQQQQGNWGQPQQPAPQNNFAPQQQQAPQQQAPQAA
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=659767 AVFI_RS01795 WP_054775770.1 393569..394102(+) (ssb) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGGCCAGCCGTGGTGTAAATAAAGTTATCCTTGTTGGTAACTTAGGGCAAGATCCTGAAATCCGTTACATGCCAAGTGG
CGGTGCGGTAGCGAATATTACAATTGCAACGTCTGAAACTTGGCGTGATAAGGCAACTGGTGAGCAACGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAATTAGCAGAAGTTGCTGGTGAGTACTTACGTAAAGGCTCTCAAGTTTACGTT
GAAGGTCAATTACAAACTCGTAAATGGCAAGATCAGAATGGTCAAGACCGTTTTACAACAGAAGTGGTTGTTCAGGGCTT
TAACGGCGTAATGCAAATGCTTGGTGGTCGTGGACAAGGTGCTCCAGCTGGCGGTCAACAACAGCAAGGCAATTGGGGCC
AGCCTCAACAACCTGCGCCACAGAATAATTTTGCGCCTCAGCAACAGCAGGCTCCTCAACAACAAGCTCCACAAGCAGCT
CAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.831
  ssb Glaesserella parasuis strain SC1401

57.527

100

0.605
  ssb Neisseria gonorrhoeae MS11

46.703

100

0.48
  ssb Neisseria meningitidis MC58

44.693

100

0.452