Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MKW11_RS04835 Genome accession   NZ_CP092689
Coordinates   1024736..1025302 (-) Length   188 a.a.
NCBI ID   WP_240284837.1    Uniprot ID   -
Organism   Gluconobacter frateurii strain ML.ISBL3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1019736..1030302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKW11_RS04820 (MKW11_04820) - 1022565..1023329 (-) 765 WP_240284834.1 class I SAM-dependent methyltransferase -
  MKW11_RS04825 (MKW11_04825) - 1023412..1024209 (+) 798 WP_240284835.1 helix-turn-helix transcriptional regulator -
  MKW11_RS04830 (MKW11_04830) - 1024206..1024673 (+) 468 WP_240284836.1 GNAT family N-acetyltransferase -
  MKW11_RS04835 (MKW11_04835) ssb 1024736..1025302 (-) 567 WP_240284837.1 single-stranded DNA-binding protein Machinery gene
  MKW11_RS04840 (MKW11_04840) uvrA 1025431..1028424 (+) 2994 WP_240284838.1 excinuclease ABC subunit UvrA -
  MKW11_RS04845 (MKW11_04845) - 1028445..1028975 (-) 531 WP_240284839.1 hypothetical protein -
  MKW11_RS04850 (MKW11_04850) - 1028989..1030053 (-) 1065 WP_240284840.1 purine nucleoside permease -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19959.51 Da        Isoelectric Point: 5.1134

>NTDB_id=659699 MKW11_RS04835 WP_240284837.1 1024736..1025302(-) (ssb) [Gluconobacter frateurii strain ML.ISBL3]
MAGSVNKVILVGNLGKDPEVRNTQSGSKIVNLTVATSETWNDRQSGERKERTEWHRVVIFNDRLGDVAERFLRKGRKVYL
EGELRTRKWTDQSGQERYTTEVTIDRFRGELVLLDSNRSGGDEGGFDGGGSSYGGGNSNGGGFGGGNRGGGFGGGNDGGR
SGGSSGGGNRGGGWDAPPDNDLDDEIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=659699 MKW11_RS04835 WP_240284837.1 1024736..1025302(-) (ssb) [Gluconobacter frateurii strain ML.ISBL3]
ATGGCAGGTAGCGTCAATAAGGTGATTCTGGTCGGGAATCTGGGCAAGGATCCCGAGGTCCGAAACACGCAATCAGGCTC
GAAGATCGTCAATCTGACGGTTGCGACGTCCGAAACATGGAACGATCGTCAGAGCGGGGAGCGCAAGGAGCGCACCGAAT
GGCATCGGGTCGTGATCTTCAACGATCGGCTGGGCGATGTGGCGGAGCGTTTCCTGCGCAAGGGCCGCAAGGTCTATCTG
GAAGGCGAACTGCGGACCCGCAAGTGGACCGATCAGTCCGGCCAGGAGCGTTACACGACGGAAGTGACGATTGATCGCTT
CCGCGGAGAGCTCGTGCTGCTCGACAGTAACCGTAGTGGCGGCGATGAGGGTGGCTTCGACGGAGGCGGCTCGTCTTATG
GCGGTGGGAACAGCAACGGCGGCGGCTTTGGTGGCGGCAACCGGGGCGGTGGCTTCGGCGGCGGTAATGATGGCGGCCGT
TCAGGTGGCTCGTCTGGTGGTGGCAACCGTGGTGGTGGCTGGGATGCGCCGCCGGATAACGATCTGGATGACGAAATCCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.644

100

0.484
  ssb Vibrio cholerae strain A1552

43.085

100

0.431
  ssb Neisseria meningitidis MC58

35.354

100

0.372
  ssb Neisseria gonorrhoeae MS11

34.848

100

0.367