Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   MKR81_RS09815 Genome accession   NZ_CP092682
Coordinates   2117855..2118442 (-) Length   195 a.a.
NCBI ID   WP_240304473.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2112855..2123442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS09795 (MKR81_09795) - 2113002..2114264 (-) 1263 WP_045378356.1 DUF945 family protein -
  MKR81_RS09800 (MKR81_09800) - 2114450..2116390 (+) 1941 WP_240304472.1 ATP-binding protein -
  MKR81_RS09805 (MKR81_09805) - 2116387..2116884 (+) 498 WP_005428532.1 response regulator -
  MKR81_RS09810 (MKR81_09810) - 2117094..2117642 (+) 549 WP_005428519.1 hypothetical protein -
  MKR81_RS09815 (MKR81_09815) tfoX 2117855..2118442 (-) 588 WP_240304473.1 TfoX/Sxy family DNA transformation protein Regulator
  MKR81_RS09820 (MKR81_09820) - 2118813..2119733 (+) 921 WP_005428540.1 HDOD domain-containing protein -
  MKR81_RS09825 (MKR81_09825) - 2119841..2120746 (+) 906 WP_045368667.1 lysine exporter LysO family protein -
  MKR81_RS09830 (MKR81_09830) - 2120956..2121468 (+) 513 WP_038891356.1 hypothetical protein -
  MKR81_RS09835 (MKR81_09835) panP 2121590..2123236 (+) 1647 WP_240304474.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22338.55 Da        Isoelectric Point: 5.8458

>NTDB_id=659673 MKR81_RS09815 WP_240304473.1 2117855..2118442(-) (tfoX) [Vibrio campbellii strain IFL1]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSDDAMFALVSNDCCYLRGGNGLDEEFTQLNCEKYKHVKKQTTATVNYYDV
TELFDSGFAGLDELLQKSINCSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=659673 MKR81_RS09815 WP_240304473.1 2117855..2118442(-) (tfoX) [Vibrio campbellii strain IFL1]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTTGGCGGTAT
TGGTTTATTCAGCGACGACGCAATGTTTGCTCTAGTAAGTAACGACTGCTGTTACTTGCGCGGTGGCAATGGCCTCGATG
AAGAGTTCACTCAACTAAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACGGTAAATTATTACGATGTA
ACAGAATTGTTCGATTCCGGTTTTGCTGGGTTGGATGAGCTGCTACAAAAATCAATTAATTGTTCTATCAAGGAACGCAA
ATACCAAAAGTCTTCAGCCAGTAGACGTTTGCGTGATCTACCGAATATGCAGCTAACGCTAGAGCGTATGGTAAAGAAAG
CTGGTATTGATGACGTAGACACGTTTTTGGAGCTTGGCCCAGTAGAAGTCTTCAACAAAGTAAGAGTGGCATACGGCAGT
GATGTAGACGTTAAGCTGCTTTGGAAGTTTGCTGGTGCGATTGATGGTATCCATTGGAAACTGATCCAAGAGCCACGCAA
GAAGCAGCTACTGGCTATGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

99.487

100

0.995
  tfoX Vibrio parahaemolyticus RIMD 2210633

92.308

100

0.923
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.43

98.974

0.687
  tfoX Vibrio cholerae strain A1552

69.43

98.974

0.687
  tfoX Aliivibrio fischeri ES114

59.162

97.949

0.579