Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MJ614_RS16005 Genome accession   NZ_CP092647
Coordinates   2859778..2860314 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EC5502     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2854778..2865314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ614_RS15985 aphA 2855067..2855780 (+) 714 WP_001317548.1 acid phosphatase AphA -
  MJ614_RS15990 yjbQ 2855891..2856307 (+) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MJ614_RS15995 yjbR 2856311..2856667 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  MJ614_RS16000 uvrA 2856702..2859524 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  MJ614_RS16005 ssb 2859778..2860314 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MJ614_RS16010 yjcB 2860413..2860694 (-) 282 WP_001295689.1 YjcB family protein -
  MJ614_RS16015 pdeC 2861124..2862710 (+) 1587 WP_233337150.1 c-di-GMP phosphodiesterase PdeC -
  MJ614_RS16020 soxS 2862713..2863036 (-) 324 WP_000019364.1 superoxide response transcriptional regulator SoxS -
  MJ614_RS16025 soxR 2863122..2863586 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=659546 MJ614_RS16005 WP_000168305.1 2859778..2860314(+) (ssb) [Escherichia coli strain EC5502]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=659546 MJ614_RS16005 WP_000168305.1 2859778..2860314(+) (ssb) [Escherichia coli strain EC5502]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489