Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKS87_RS21915 Genome accession   NZ_CP092631
Coordinates   4215907..4216425 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain YB-15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4210907..4221425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS21885 (MKS87_21885) yyaJ 4211410..4212765 (+) 1356 WP_197196355.1 MFS transporter -
  MKS87_RS21890 (MKS87_21890) maa 4212799..4213353 (-) 555 WP_120363564.1 sugar O-acetyltransferase -
  MKS87_RS21895 (MKS87_21895) yyaH 4213371..4213751 (-) 381 WP_003244460.1 VOC family protein -
  MKS87_RS21900 (MKS87_21900) ccpB 4213807..4214742 (-) 936 WP_197196356.1 transcriptional regulator CcpB -
  MKS87_RS21905 (MKS87_21905) xth 4214802..4215560 (-) 759 WP_041336712.1 exodeoxyribonuclease III -
  MKS87_RS21910 (MKS87_21910) rpsR 4215624..4215863 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  MKS87_RS21915 (MKS87_21915) ssbA 4215907..4216425 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  MKS87_RS21920 (MKS87_21920) rpsF 4216466..4216753 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  MKS87_RS21925 (MKS87_21925) ychF 4216864..4217964 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  MKS87_RS21930 (MKS87_21930) yyaE 4218091..4220094 (-) 2004 WP_197196357.1 molybdopterin-dependent oxidoreductase -
  MKS87_RS21935 (MKS87_21935) yyzM 4220145..4220351 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=659396 MKS87_RS21915 WP_003219228.1 4215907..4216425(-) (ssbA) [Bacillus subtilis strain YB-15]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=659396 MKS87_RS21915 WP_003219228.1 4215907..4216425(-) (ssbA) [Bacillus subtilis strain YB-15]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378