Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MKS87_RS13440 Genome accession   NZ_CP092631
Coordinates   2578983..2579414 (-) Length   143 a.a.
NCBI ID   WP_014480256.1    Uniprot ID   A0A0D1KRY1
Organism   Bacillus subtilis strain YB-15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2573983..2584414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS13390 (MKS87_13390) sinI 2574176..2574349 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  MKS87_RS13395 (MKS87_13395) sinR 2574383..2574718 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MKS87_RS13400 (MKS87_13400) tasA 2574811..2575596 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  MKS87_RS13405 (MKS87_13405) sipW 2575660..2576232 (-) 573 WP_003246088.1 signal peptidase I -
  MKS87_RS13410 (MKS87_13410) tapA 2576216..2576977 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  MKS87_RS13415 (MKS87_13415) yqzG 2577249..2577575 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MKS87_RS13420 (MKS87_13420) spoIIT 2577617..2577796 (-) 180 WP_029726723.1 YqzE family protein -
  MKS87_RS13425 (MKS87_13425) comGG 2577868..2578242 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  MKS87_RS13430 (MKS87_13430) comGF 2578243..2578626 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  MKS87_RS13435 (MKS87_13435) comGE 2578652..2578999 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  MKS87_RS13440 (MKS87_13440) comGD 2578983..2579414 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  MKS87_RS13445 (MKS87_13445) comGC 2579404..2579700 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  MKS87_RS13450 (MKS87_13450) comGB 2579714..2580751 (-) 1038 WP_173614185.1 comG operon protein ComGB Machinery gene
  MKS87_RS13455 (MKS87_13455) comGA 2580738..2581808 (-) 1071 WP_069322755.1 competence protein ComGA Machinery gene
  MKS87_RS13460 (MKS87_13460) corA 2582219..2583172 (-) 954 WP_029317911.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16091.75 Da        Isoelectric Point: 10.1947

>NTDB_id=659362 MKS87_RS13440 WP_014480256.1 2578983..2579414(-) (comGD) [Bacillus subtilis strain YB-15]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=659362 MKS87_RS13440 WP_014480256.1 2578983..2579414(-) (comGD) [Bacillus subtilis strain YB-15]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGGCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KRY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

98.601

100

0.986