Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MKS87_RS13455 Genome accession   NZ_CP092631
Coordinates   2580738..2581808 (-) Length   356 a.a.
NCBI ID   WP_069322755.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2575738..2586808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS13410 (MKS87_13410) tapA 2576216..2576977 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  MKS87_RS13415 (MKS87_13415) yqzG 2577249..2577575 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MKS87_RS13420 (MKS87_13420) spoIIT 2577617..2577796 (-) 180 WP_029726723.1 YqzE family protein -
  MKS87_RS13425 (MKS87_13425) comGG 2577868..2578242 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  MKS87_RS13430 (MKS87_13430) comGF 2578243..2578626 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  MKS87_RS13435 (MKS87_13435) comGE 2578652..2578999 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  MKS87_RS13440 (MKS87_13440) comGD 2578983..2579414 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  MKS87_RS13445 (MKS87_13445) comGC 2579404..2579700 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  MKS87_RS13450 (MKS87_13450) comGB 2579714..2580751 (-) 1038 WP_173614185.1 comG operon protein ComGB Machinery gene
  MKS87_RS13455 (MKS87_13455) comGA 2580738..2581808 (-) 1071 WP_069322755.1 competence protein ComGA Machinery gene
  MKS87_RS13460 (MKS87_13460) corA 2582219..2583172 (-) 954 WP_029317911.1 magnesium transporter CorA -
  MKS87_RS13465 (MKS87_13465) yqhB 2583315..2584643 (+) 1329 WP_173614186.1 hemolysin family protein -
  MKS87_RS13470 (MKS87_13470) rsbRD 2584696..2585532 (-) 837 WP_173614187.1 RsbT co-antagonist protein RsbRD -
  MKS87_RS13480 (MKS87_13480) mgsR 2585756..2586136 (-) 381 WP_014477337.1 transcriptional regulator MgsR -
  MKS87_RS13485 (MKS87_13485) yqgY 2586368..2586613 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40457.66 Da        Isoelectric Point: 9.1812

>NTDB_id=659365 MKS87_RS13455 WP_069322755.1 2580738..2581808(-) (comGA) [Bacillus subtilis strain YB-15]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIQQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=659365 MKS87_RS13455 WP_069322755.1 2580738..2581808(-) (comGA) [Bacillus subtilis strain YB-15]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTCTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCCAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGTGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.719

100

0.997
  pilB Glaesserella parasuis strain SC1401

43.878

82.584

0.362