Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   MKS89_RS06775 Genome accession   NZ_CP092587
Coordinates   1501933..1502538 (+) Length   201 a.a.
NCBI ID   WP_072957126.1    Uniprot ID   A0A1M4YIZ2
Organism   Vibrio gazogenes strain PB1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1496933..1507538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS89_RS06755 (MKS89_06755) - 1497275..1497541 (-) 267 WP_072957119.1 GrxA family glutaredoxin -
  MKS89_RS06760 (MKS89_06760) - 1497719..1498573 (-) 855 WP_027694049.1 MurR/RpiR family transcriptional regulator -
  MKS89_RS06765 (MKS89_06765) panP 1498899..1500551 (-) 1653 WP_072957121.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  MKS89_RS06770 (MKS89_06770) - 1500692..1501612 (-) 921 WP_072957123.1 HDOD domain-containing protein -
  MKS89_RS06775 (MKS89_06775) tfoX 1501933..1502538 (+) 606 WP_072957126.1 TfoX/Sxy family DNA transformation protein Regulator
  MKS89_RS06780 (MKS89_06780) - 1502604..1503152 (-) 549 WP_072957128.1 hypothetical protein -
  MKS89_RS06785 (MKS89_06785) - 1503468..1503968 (-) 501 WP_072957131.1 response regulator -
  MKS89_RS06790 (MKS89_06790) - 1503993..1505945 (-) 1953 WP_072957132.1 ATP-binding protein -
  MKS89_RS06795 (MKS89_06795) - 1506212..1507465 (+) 1254 WP_072957135.1 DUF945 family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23328.43 Da        Isoelectric Point: 9.8239

>NTDB_id=659180 MKS89_RS06775 WP_072957126.1 1501933..1502538(+) (tfoX) [Vibrio gazogenes strain PB1]
MIATKFFDYLMERENFDTKSIFGDIGLFWQDAMFALISTNHIYIRGGGVLDEKLNALNCSKYVFVKKQSISKVNYYDVTE
LFQSGYPYLGELISRSKALAIFQKKQKYSLSNRRLRDLPNLHLTIERMMKKSGIPDVATFFKLGALKAFIKVRQLYGTTT
DIKLLWKFVGAIEEIHWKLIPEKRKQQLLTECCILMGIEEG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=659180 MKS89_RS06775 WP_072957126.1 1501933..1502538(+) (tfoX) [Vibrio gazogenes strain PB1]
ATGATAGCAACAAAATTTTTTGATTACTTAATGGAAAGAGAAAACTTTGACACGAAGTCAATATTTGGGGATATAGGGCT
ATTTTGGCAAGATGCCATGTTTGCTTTAATCAGCACTAATCATATTTATATTCGAGGAGGCGGTGTTCTGGATGAAAAAT
TAAATGCGCTAAATTGCTCAAAATATGTCTTTGTTAAAAAACAAAGTATTTCTAAAGTGAATTATTATGATGTTACTGAA
TTGTTTCAATCCGGTTATCCTTATTTGGGAGAGTTGATCAGCCGTTCCAAGGCATTGGCTATTTTTCAGAAAAAGCAAAA
GTATTCATTATCGAACCGACGTTTGAGGGATTTACCCAATTTACACTTGACTATCGAGCGAATGATGAAGAAATCGGGGA
TTCCGGATGTTGCCACATTCTTTAAATTGGGTGCTTTGAAAGCTTTTATCAAAGTTAGGCAACTGTACGGCACAACGACA
GATATTAAACTGTTATGGAAGTTTGTGGGAGCCATTGAAGAAATTCACTGGAAGCTGATCCCGGAAAAGCGCAAGCAGCA
GTTGTTGACTGAATGCTGCATCCTGATGGGAATAGAGGAGGGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-81)

TfoX C-terminal domain (TfoX_C)

(112-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4YIZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

54.688

95.522

0.522
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

53.125

95.522

0.507
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

53.125

95.522

0.507
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

53.125

95.522

0.507
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

53.125

95.522

0.507
  tfoX Vibrio cholerae strain A1552

53.125

95.522

0.507
  tfoX Vibrio parahaemolyticus RIMD 2210633

52.604

95.522

0.502
  tfoX Aliivibrio fischeri ES114

43.455

95.025

0.413