Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | NEJAP_RS16625 | Genome accession | NZ_AP014546 |
| Coordinates | 3530156..3531325 (+) | Length | 389 a.a. |
| NCBI ID | WP_201348272.1 | Uniprot ID | - |
| Organism | Neptunomonas japonica JAMM 1380 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3525156..3536325
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NEJAP_RS16600 (NEJAP_3207) | livH | 3525408..3526334 (+) | 927 | WP_201348267.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| NEJAP_RS16605 (NEJAP_3208) | - | 3526334..3527581 (+) | 1248 | WP_201348268.1 | high-affinity branched-chain amino acid ABC transporter permease LivM | - |
| NEJAP_RS16610 (NEJAP_3209) | livG | 3527581..3528348 (+) | 768 | WP_201348269.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG | - |
| NEJAP_RS16615 (NEJAP_3210) | - | 3528350..3529051 (+) | 702 | WP_201348270.1 | ABC transporter ATP-binding protein | - |
| NEJAP_RS16620 (NEJAP_3211) | - | 3529216..3530142 (+) | 927 | WP_201348271.1 | exopolyphosphatase | - |
| NEJAP_RS16625 (NEJAP_3212) | pilU | 3530156..3531325 (+) | 1170 | WP_201348272.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| NEJAP_RS16630 (NEJAP_3213) | - | 3531398..3531808 (+) | 411 | WP_201348273.1 | SMI1/KNR4 family protein | - |
| NEJAP_RS16635 (NEJAP_3214) | - | 3531894..3532784 (-) | 891 | WP_201348274.1 | hypothetical protein | - |
| NEJAP_RS16640 (NEJAP_3215) | - | 3532917..3534326 (+) | 1410 | WP_236590978.1 | sigma-54 interaction domain-containing protein | - |
| NEJAP_RS16645 (NEJAP_3216) | - | 3534490..3536121 (+) | 1632 | WP_201348275.1 | acyl CoA:acetate/3-ketoacid CoA transferase | - |
Sequence
Protein
Download Length: 389 a.a. Molecular weight: 42953.85 Da Isoelectric Point: 5.7642
>NTDB_id=65886 NEJAP_RS16625 WP_201348272.1 3530156..3531325(+) (pilU) [Neptunomonas japonica JAMM 1380]
MDFYDCLRLLAAKDGSDLYLSTGAPPCGKFQGVLKPLSKTPFQPGEIEKIALQVMDQEQKTAFQHDLEMNLAISVEKSGR
FRLNIFKQRNDVAIVARNIKTDIPRMEDLGLPDVLKDVIMAKRGLVLFVGGTGSGKSTSLAALIDHRNSNSGGHIITIED
PIEFVHHHKKSIVNQREVGVDTRSFHNALVNTLRQAPDVILIGEVRDKETMEHCLAFAETGHLAISTLHANNANQAFDRI
INFFPEEKRHQLLTDLSLNVRAIVSQRLVHTIDGKRAAAIEILLGTSTIKELIFKGDIDGIKEIMAKSEALGMQTFDSAL
FKLAREGKISEEEAIKNADSANNLRLKFKLSEEGNSSSAGGLNFSLEEDKAEEDDAGEEIDDHKGQTVF
MDFYDCLRLLAAKDGSDLYLSTGAPPCGKFQGVLKPLSKTPFQPGEIEKIALQVMDQEQKTAFQHDLEMNLAISVEKSGR
FRLNIFKQRNDVAIVARNIKTDIPRMEDLGLPDVLKDVIMAKRGLVLFVGGTGSGKSTSLAALIDHRNSNSGGHIITIED
PIEFVHHHKKSIVNQREVGVDTRSFHNALVNTLRQAPDVILIGEVRDKETMEHCLAFAETGHLAISTLHANNANQAFDRI
INFFPEEKRHQLLTDLSLNVRAIVSQRLVHTIDGKRAAAIEILLGTSTIKELIFKGDIDGIKEIMAKSEALGMQTFDSAL
FKLAREGKISEEEAIKNADSANNLRLKFKLSEEGNSSSAGGLNFSLEEDKAEEDDAGEEIDDHKGQTVF
Nucleotide
Download Length: 1170 bp
>NTDB_id=65886 NEJAP_RS16625 WP_201348272.1 3530156..3531325(+) (pilU) [Neptunomonas japonica JAMM 1380]
ATGGATTTTTACGATTGTCTTCGTTTACTCGCGGCTAAAGATGGTTCCGATCTTTATCTCTCAACGGGAGCACCGCCATG
CGGAAAATTTCAGGGAGTTCTCAAACCCCTGAGTAAGACGCCCTTTCAGCCCGGAGAGATCGAAAAAATTGCTTTGCAAG
TGATGGACCAAGAGCAAAAAACCGCTTTCCAACACGATTTAGAGATGAACCTAGCCATCTCTGTTGAGAAGTCCGGCCGC
TTCCGTCTTAATATTTTTAAACAGCGTAATGATGTTGCTATTGTAGCTCGAAATATCAAGACAGATATTCCCCGCATGGA
AGACCTAGGTCTTCCAGATGTACTGAAAGATGTCATTATGGCCAAGCGTGGTCTGGTACTATTTGTAGGGGGAACAGGCT
CTGGTAAATCAACATCACTCGCAGCTCTTATCGACCACCGTAACAGCAATAGTGGTGGACACATCATCACCATTGAAGAT
CCCATCGAGTTTGTACATCACCATAAAAAATCGATCGTCAATCAGCGTGAAGTCGGCGTAGATACTCGTAGTTTTCACAA
CGCCTTGGTCAACACACTGCGTCAAGCTCCCGATGTTATTCTTATCGGAGAGGTGCGCGATAAAGAAACAATGGAACACT
GCTTAGCTTTTGCAGAAACAGGTCACCTTGCTATTTCTACACTGCACGCCAATAATGCGAACCAAGCATTTGACCGTATC
ATTAACTTTTTCCCCGAAGAAAAGCGCCACCAGCTGTTGACTGACCTATCACTGAACGTACGCGCTATTGTTTCACAGCG
CCTAGTGCACACAATTGATGGAAAACGAGCAGCAGCCATTGAGATCCTCCTAGGAACTTCAACGATTAAAGAGCTTATCT
TTAAAGGCGATATCGATGGCATCAAAGAGATTATGGCAAAGTCCGAAGCCTTGGGTATGCAAACCTTCGACTCAGCTCTT
TTCAAGCTCGCCAGAGAAGGAAAAATTAGCGAGGAAGAAGCCATTAAGAATGCTGATTCAGCAAATAACCTGCGCTTAAA
ATTCAAGTTAAGCGAAGAGGGAAATAGCAGCAGTGCTGGTGGATTAAACTTCAGTTTAGAAGAAGATAAAGCTGAAGAGG
ACGACGCTGGAGAGGAAATAGACGATCACAAAGGCCAGACAGTGTTCTAA
ATGGATTTTTACGATTGTCTTCGTTTACTCGCGGCTAAAGATGGTTCCGATCTTTATCTCTCAACGGGAGCACCGCCATG
CGGAAAATTTCAGGGAGTTCTCAAACCCCTGAGTAAGACGCCCTTTCAGCCCGGAGAGATCGAAAAAATTGCTTTGCAAG
TGATGGACCAAGAGCAAAAAACCGCTTTCCAACACGATTTAGAGATGAACCTAGCCATCTCTGTTGAGAAGTCCGGCCGC
TTCCGTCTTAATATTTTTAAACAGCGTAATGATGTTGCTATTGTAGCTCGAAATATCAAGACAGATATTCCCCGCATGGA
AGACCTAGGTCTTCCAGATGTACTGAAAGATGTCATTATGGCCAAGCGTGGTCTGGTACTATTTGTAGGGGGAACAGGCT
CTGGTAAATCAACATCACTCGCAGCTCTTATCGACCACCGTAACAGCAATAGTGGTGGACACATCATCACCATTGAAGAT
CCCATCGAGTTTGTACATCACCATAAAAAATCGATCGTCAATCAGCGTGAAGTCGGCGTAGATACTCGTAGTTTTCACAA
CGCCTTGGTCAACACACTGCGTCAAGCTCCCGATGTTATTCTTATCGGAGAGGTGCGCGATAAAGAAACAATGGAACACT
GCTTAGCTTTTGCAGAAACAGGTCACCTTGCTATTTCTACACTGCACGCCAATAATGCGAACCAAGCATTTGACCGTATC
ATTAACTTTTTCCCCGAAGAAAAGCGCCACCAGCTGTTGACTGACCTATCACTGAACGTACGCGCTATTGTTTCACAGCG
CCTAGTGCACACAATTGATGGAAAACGAGCAGCAGCCATTGAGATCCTCCTAGGAACTTCAACGATTAAAGAGCTTATCT
TTAAAGGCGATATCGATGGCATCAAAGAGATTATGGCAAAGTCCGAAGCCTTGGGTATGCAAACCTTCGACTCAGCTCTT
TTCAAGCTCGCCAGAGAAGGAAAAATTAGCGAGGAAGAAGCCATTAAGAATGCTGATTCAGCAAATAACCTGCGCTTAAA
ATTCAAGTTAAGCGAAGAGGGAAATAGCAGCAGTGCTGGTGGATTAAACTTCAGTTTAGAAGAAGATAAAGCTGAAGAGG
ACGACGCTGGAGAGGAAATAGACGATCACAAAGGCCAGACAGTGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
54.813 |
96.144 |
0.527 |
| pilU | Acinetobacter baylyi ADP1 |
52.941 |
91.774 |
0.486 |
| pilU | Vibrio cholerae strain A1552 |
48.571 |
89.974 |
0.437 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.478 |
87.147 |
0.37 |