Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | MS6_RS12275 | Genome accession | NZ_AP014524 |
| Coordinates | 2663699..2664289 (-) | Length | 196 a.a. |
| NCBI ID | WP_000157688.1 | Uniprot ID | A0A655VUM8 |
| Organism | Vibrio cholerae MS6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2658699..2669289
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MS6_RS12255 (MS6_2349) | aroB | 2659626..2660711 (-) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
| MS6_RS12260 (MS6_2350) | aroK | 2660739..2661263 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| MS6_RS12265 (MS6_2351) | pilQ | 2661450..2663165 (-) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| MS6_RS12270 (MS6_2352) | pilP | 2663191..2663709 (-) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| MS6_RS12275 (MS6_2353) | pilO | 2663699..2664289 (-) | 591 | WP_000157688.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| MS6_RS12280 (MS6_2354) | pilN | 2664282..2664866 (-) | 585 | WP_000902746.1 | PilN domain-containing protein | Machinery gene |
| MS6_RS12285 (MS6_2355) | pilM | 2664856..2665872 (-) | 1017 | WP_001898302.1 | type IV pilus assembly protein PilM | Machinery gene |
| MS6_RS12290 (MS6_2356) | - | 2666015..2668492 (+) | 2478 | WP_032481152.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22891.30 Da Isoelectric Point: 4.4169
>NTDB_id=65833 MS6_RS12275 WP_000157688.1 2663699..2664289(-) (pilO) [Vibrio cholerae MS6]
MASLQELELDEISEWPLLPQLLVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLLVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=65833 MS6_RS12275 WP_000157688.1 2663699..2664289(-) (pilO) [Vibrio cholerae MS6]
ATGGCTAGTTTGCAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGCTACTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATTCAAGCTCAGTTGGATGAG
CTCAAAGAGCGTTACGATTTTTTACTCCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACTGGAAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGGGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTTTGCAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGCTACTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATTCAAGCTCAGTTGGATGAG
CTCAAAGAGCGTTACGATTTTTTACTCCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACTGGAAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGGGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
99.49 |
100 |
0.995 |
| pilO | Vibrio campbellii strain DS40M4 |
71.429 |
96.429 |
0.689 |