Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   MS6_RS12270 Genome accession   NZ_AP014524
Coordinates   2663191..2663709 (-) Length   172 a.a.
NCBI ID   WP_000792032.1    Uniprot ID   -
Organism   Vibrio cholerae MS6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2658191..2668709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6_RS12255 (MS6_2349) aroB 2659626..2660711 (-) 1086 WP_000439805.1 3-dehydroquinate synthase -
  MS6_RS12260 (MS6_2350) aroK 2660739..2661263 (-) 525 WP_000818616.1 shikimate kinase AroK -
  MS6_RS12265 (MS6_2351) pilQ 2661450..2663165 (-) 1716 WP_000788426.1 type IV pilus secretin PilQ Machinery gene
  MS6_RS12270 (MS6_2352) pilP 2663191..2663709 (-) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  MS6_RS12275 (MS6_2353) pilO 2663699..2664289 (-) 591 WP_000157688.1 type 4a pilus biogenesis protein PilO Machinery gene
  MS6_RS12280 (MS6_2354) pilN 2664282..2664866 (-) 585 WP_000902746.1 PilN domain-containing protein Machinery gene
  MS6_RS12285 (MS6_2355) pilM 2664856..2665872 (-) 1017 WP_001898302.1 type IV pilus assembly protein PilM Machinery gene
  MS6_RS12290 (MS6_2356) - 2666015..2668492 (+) 2478 WP_032481152.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19084.25 Da        Isoelectric Point: 10.0857

>NTDB_id=65832 MS6_RS12270 WP_000792032.1 2663191..2663709(-) (pilP) [Vibrio cholerae MS6]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=65832 MS6_RS12270 WP_000792032.1 2663191..2663709(-) (pilP) [Vibrio cholerae MS6]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

100

100

1
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564

Multiple sequence alignment