Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MJ920_RS19560 Genome accession   NZ_CP092499
Coordinates   3936823..3937341 (-) Length   172 a.a.
NCBI ID   WP_173612866.1    Uniprot ID   -
Organism   Bacillus velezensis strain YC_89     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3931823..3942341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ920_RS19530 (MJ920_19485) - 3933024..3933404 (-) 381 WP_004392999.1 VOC family protein -
  MJ920_RS19535 (MJ920_19490) - 3933461..3934399 (-) 939 WP_024086045.1 LacI family DNA-binding transcriptional regulator -
  MJ920_RS19540 (MJ920_19495) xth 3934462..3935220 (-) 759 WP_015387411.1 exodeoxyribonuclease III -
  MJ920_RS19545 (MJ920_19500) - 3935217..3935774 (-) 558 WP_088037178.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  MJ920_RS19550 (MJ920_19505) - 3935771..3936352 (-) 582 WP_278269390.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  MJ920_RS19555 (MJ920_19510) rpsR 3936540..3936779 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  MJ920_RS19560 (MJ920_19515) ssbA 3936823..3937341 (-) 519 WP_173612866.1 single-stranded DNA-binding protein SsbA Machinery gene
  MJ920_RS19565 (MJ920_19520) rpsF 3937381..3937668 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  MJ920_RS19570 (MJ920_19525) ychF 3937780..3938880 (-) 1101 WP_173612865.1 redox-regulated ATPase YchF -
  MJ920_RS19575 (MJ920_19530) - 3939007..3941010 (-) 2004 WP_278269391.1 molybdopterin-dependent oxidoreductase -
  MJ920_RS19580 (MJ920_19535) - 3941057..3941263 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18775.33 Da        Isoelectric Point: 4.7621

>NTDB_id=658219 MJ920_RS19560 WP_173612866.1 3936823..3937341(-) (ssbA) [Bacillus velezensis strain YC_89]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFSGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=658219 MJ920_RS19560 WP_173612866.1 3936823..3937341(-) (ssbA) [Bacillus velezensis strain YC_89]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCAGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.983
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.384