Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MJ920_RS12100 Genome accession   NZ_CP092499
Coordinates   2501001..2501336 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain YC_89     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2496001..2506336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ920_RS12080 (MJ920_12075) gcvT 2496612..2497712 (-) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -
  MJ920_RS12085 (MJ920_12080) - 2498135..2499805 (+) 1671 WP_003153107.1 SNF2-related protein -
  MJ920_RS12090 (MJ920_12085) - 2499823..2500617 (+) 795 WP_014305407.1 YqhG family protein -
  MJ920_RS12095 (MJ920_12090) sinI 2500794..2500967 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  MJ920_RS12100 (MJ920_12095) sinR 2501001..2501336 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  MJ920_RS12105 (MJ920_12100) - 2501384..2502169 (-) 786 WP_003153102.1 TasA family protein -
  MJ920_RS12110 (MJ920_12105) - 2502233..2502817 (-) 585 WP_012117977.1 signal peptidase I -
  MJ920_RS12115 (MJ920_12110) tapA 2502789..2503460 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  MJ920_RS12120 (MJ920_12115) - 2503719..2504048 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  MJ920_RS12125 (MJ920_12120) - 2504088..2504267 (-) 180 WP_003153093.1 YqzE family protein -
  MJ920_RS12130 (MJ920_12125) comGG 2504324..2504701 (-) 378 WP_043867284.1 competence type IV pilus minor pilin ComGG Machinery gene
  MJ920_RS12135 (MJ920_12130) comGF 2504702..2505202 (-) 501 WP_226565836.1 competence type IV pilus minor pilin ComGF -
  MJ920_RS12140 (MJ920_12135) comGE 2505111..2505425 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  MJ920_RS12145 (MJ920_12140) comGD 2505409..2505846 (-) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  MJ920_RS12150 (MJ920_12145) comGC 2505836..2506144 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=658185 MJ920_RS12100 WP_003153104.1 2501001..2501336(+) (sinR) [Bacillus velezensis strain YC_89]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=658185 MJ920_RS12100 WP_003153104.1 2501001..2501336(+) (sinR) [Bacillus velezensis strain YC_89]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991