Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG885_RS03460 Genome accession   NZ_CP108293
Coordinates   786018..786689 (-) Length   223 a.a.
NCBI ID   WP_405725747.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00028     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 781018..791689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG885_RS03440 (OG885_03415) - 782222..782869 (+) 648 WP_405725735.1 dihydrofolate reductase family protein -
  OG885_RS03445 (OG885_03420) pgm 782890..784530 (-) 1641 WP_405725738.1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) -
  OG885_RS03450 (OG885_03425) - 784675..785310 (+) 636 WP_405725741.1 class I SAM-dependent methyltransferase -
  OG885_RS03455 (OG885_03430) - 785447..785953 (+) 507 WP_405725744.1 cupin domain-containing protein -
  OG885_RS03460 (OG885_03435) dinR/lexA 786018..786689 (-) 672 WP_405725747.1 transcriptional repressor LexA Regulator
  OG885_RS03465 (OG885_03440) - 786803..787531 (+) 729 WP_405725750.1 2-phosphosulfolactate phosphatase -
  OG885_RS03470 (OG885_03445) - 787590..787954 (-) 365 Protein_692 hypothetical protein -
  OG885_RS03475 (OG885_03450) - 788174..789607 (+) 1434 WP_405725753.1 diacylglycerol/lipid kinase family protein -
  OG885_RS03480 (OG885_03455) - 789600..790196 (+) 597 WP_405725756.1 phosphatase PAP2 family protein -
  OG885_RS03485 (OG885_03460) - 790220..790651 (-) 432 WP_405725759.1 helix-turn-helix domain-containing protein -
  OG885_RS03490 (OG885_03465) - 790732..791580 (+) 849 WP_405725762.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24180.54 Da        Isoelectric Point: 5.3424

>NTDB_id=658189 OG885_RS03460 WP_405725747.1 786018..786689(-) (dinR/lexA) [Streptomyces sp. NBC_00028]
MENTTPARRGRPPGPRVAEGELTSRQAAIVRYITETVDRQGYPPSMREIGHAVELASTSSVAHQLMVLERKGVLYRDPHT
PRAYQVRPSWAPDLGHRGAEPVEVPLVGRIAAGAPLLADEMVEDVYSLPRQVVGDGDLFALTVSGDSMIGAAICDGDIVT
VRRQDSADHGDIVAALLEDEATVKVLRRQDGQVWLMPRNPAYEPIPGDQAQILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=658189 OG885_RS03460 WP_405725747.1 786018..786689(-) (dinR/lexA) [Streptomyces sp. NBC_00028]
ATGGAGAACACAACGCCCGCCCGCCGGGGCCGTCCCCCGGGGCCCCGGGTCGCCGAAGGAGAGCTGACGAGCCGCCAGGC
GGCCATCGTCCGCTACATCACCGAGACGGTCGACCGGCAGGGCTACCCGCCGTCGATGCGGGAGATCGGCCACGCCGTGG
AACTCGCCAGTACGTCCTCGGTCGCCCACCAGCTGATGGTGCTGGAGCGCAAGGGCGTCCTCTACCGCGACCCCCACACC
CCCCGCGCCTACCAAGTCCGCCCCTCCTGGGCACCCGACCTGGGCCACCGAGGCGCGGAACCCGTCGAGGTACCCCTCGT
CGGCCGGATCGCGGCCGGCGCACCGCTGCTCGCCGACGAGATGGTGGAGGACGTCTACTCCCTGCCCCGGCAGGTGGTGG
GCGACGGCGACCTGTTCGCCCTGACGGTGTCCGGCGACTCGATGATCGGGGCGGCGATCTGCGACGGCGACATCGTGACC
GTCAGACGCCAGGACAGCGCCGACCACGGAGACATCGTCGCCGCGCTCCTGGAGGACGAGGCCACCGTGAAGGTGCTCCG
CCGCCAGGACGGCCAGGTGTGGCTGATGCCCCGCAACCCCGCCTACGAGCCGATCCCGGGCGACCAGGCCCAGATCCTCG
GCAAGGTGGTCGGAGTCCTGCGCGTCCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.39

91.928

0.408