Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MJ920_RS12150 Genome accession   NZ_CP092499
Coordinates   2505836..2506144 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus velezensis strain YC_89     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2500836..2511144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ920_RS12100 (MJ920_12095) sinR 2501001..2501336 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  MJ920_RS12105 (MJ920_12100) - 2501384..2502169 (-) 786 WP_003153102.1 TasA family protein -
  MJ920_RS12110 (MJ920_12105) - 2502233..2502817 (-) 585 WP_012117977.1 signal peptidase I -
  MJ920_RS12115 (MJ920_12110) tapA 2502789..2503460 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  MJ920_RS12120 (MJ920_12115) - 2503719..2504048 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  MJ920_RS12125 (MJ920_12120) - 2504088..2504267 (-) 180 WP_003153093.1 YqzE family protein -
  MJ920_RS12130 (MJ920_12125) comGG 2504324..2504701 (-) 378 WP_043867284.1 competence type IV pilus minor pilin ComGG Machinery gene
  MJ920_RS12135 (MJ920_12130) comGF 2504702..2505202 (-) 501 WP_226565836.1 competence type IV pilus minor pilin ComGF -
  MJ920_RS12140 (MJ920_12135) comGE 2505111..2505425 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  MJ920_RS12145 (MJ920_12140) comGD 2505409..2505846 (-) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  MJ920_RS12150 (MJ920_12145) comGC 2505836..2506144 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  MJ920_RS12155 (MJ920_12150) comGB 2506149..2507186 (-) 1038 WP_043867286.1 competence type IV pilus assembly protein ComGB Machinery gene
  MJ920_RS12160 (MJ920_12155) comGA 2507173..2508243 (-) 1071 WP_043867287.1 competence type IV pilus ATPase ComGA Machinery gene
  MJ920_RS12165 (MJ920_12160) - 2508441..2509391 (-) 951 WP_003153082.1 magnesium transporter CorA family protein -
  MJ920_RS12170 (MJ920_12165) - 2509537..2510839 (+) 1303 Protein_2352 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=658189 MJ920_RS12150 WP_003153087.1 2505836..2506144(-) (comGC) [Bacillus velezensis strain YC_89]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=658189 MJ920_RS12150 WP_003153087.1 2505836..2506144(-) (comGC) [Bacillus velezensis strain YC_89]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402