Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKD48_RS12455 Genome accession   NZ_CP092475
Coordinates   2450407..2450910 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain P5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2445407..2455910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD48_RS12420 - 2445437..2445700 (+) 264 WP_001055898.1 helix-turn-helix transcriptional regulator -
  MKD48_RS12425 - 2445839..2446411 (-) 573 WP_000769722.1 PepSY domain-containing protein -
  MKD48_RS12430 - 2446592..2446960 (-) 369 WP_000849173.1 YxeA family protein -
  MKD48_RS12435 - 2447329..2447940 (-) 612 WP_000473140.1 toxin -
  MKD48_RS12440 - 2448140..2448870 (+) 731 Protein_2414 tyrosine-type recombinase/integrase -
  MKD48_RS12445 - 2448909..2449847 (+) 939 WP_061739073.1 Abi family protein -
  MKD48_RS12450 rpsR 2450113..2450355 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  MKD48_RS12455 ssbA 2450407..2450910 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  MKD48_RS12460 rpsF 2450931..2451227 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  MKD48_RS12465 - 2451472..2451663 (+) 192 WP_001052483.1 hypothetical protein -
  MKD48_RS12470 ychF 2451749..2452846 (-) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  MKD48_RS12475 - 2452858..2453061 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  MKD48_RS12480 - 2453091..2453972 (-) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  MKD48_RS12485 - 2454126..2454971 (-) 846 WP_001670258.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=657917 MKD48_RS12455 WP_000934799.1 2450407..2450910(-) (ssbA) [Staphylococcus aureus strain P5]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=657917 MKD48_RS12455 WP_000934799.1 2450407..2450910(-) (ssbA) [Staphylococcus aureus strain P5]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGGC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365