Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MKD48_RS08340 Genome accession   NZ_CP092475
Coordinates   1623731..1624603 (-) Length   290 a.a.
NCBI ID   WP_000620187.1    Uniprot ID   A0AAE2ZTP9
Organism   Staphylococcus aureus strain P5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1618731..1629603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD48_RS08330 trmFO 1620019..1621326 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  MKD48_RS08335 topA 1621482..1623557 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  MKD48_RS08340 dprA 1623731..1624603 (-) 873 WP_000620187.1 DNA-processing protein DprA Machinery gene
  MKD48_RS08345 fmhC 1624776..1626020 (-) 1245 WP_000673440.1 FemA/FemB family glycyltransferase FmhC -
  MKD48_RS08350 - 1626048..1627166 (-) 1119 WP_001041672.1 LysM peptidoglycan-binding domain-containing protein -
  MKD48_RS08355 sucD 1627393..1628301 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  MKD48_RS08360 sucC 1628323..1629489 (-) 1167 WP_001020802.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33609.00 Da        Isoelectric Point: 9.5142

>NTDB_id=657908 MKD48_RS08340 WP_000620187.1 1623731..1624603(-) (dprA) [Staphylococcus aureus strain P5]
MIRLFLLKLYWSHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=657908 MKD48_RS08340 WP_000620187.1 1623731..1624603(-) (dprA) [Staphylococcus aureus strain P5]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGTCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.31

100

0.993
  dprA Staphylococcus aureus N315

98.966

100

0.99
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae D39

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae R6

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus mitis SK321

37.809

97.586

0.369