Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OHV04_RS26750 Genome accession   NZ_CP108268
Coordinates   5975255..5976466 (+) Length   403 a.a.
NCBI ID   WP_405716847.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5970255..5981466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHV04_RS26735 (OHV04_26740) - 5971268..5972686 (+) 1419 WP_405716844.1 sugar porter family MFS transporter -
  OHV04_RS26740 (OHV04_26745) - 5972697..5973671 (-) 975 WP_405716845.1 LLM class flavin-dependent oxidoreductase -
  OHV04_RS26745 (OHV04_26750) - 5973730..5975145 (-) 1416 WP_405716846.1 purine-cytosine permease family protein -
  OHV04_RS26750 (OHV04_26755) pilA 5975255..5976466 (+) 1212 WP_405716847.1 signal recognition particle-docking protein FtsY Machinery gene
  OHV04_RS26755 (OHV04_26760) - 5976563..5977222 (-) 660 WP_405716848.1 bifunctional DNA primase/polymerase -
  OHV04_RS26760 (OHV04_26765) - 5977648..5979120 (+) 1473 WP_405716849.1 hypothetical protein -
  OHV04_RS26765 (OHV04_26770) - 5979492..5980844 (+) 1353 WP_405716850.1 ammonium transporter -
  OHV04_RS26770 (OHV04_26775) - 5980841..5981179 (+) 339 WP_405716851.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 42287.22 Da        Isoelectric Point: 4.4406

>NTDB_id=657823 OHV04_RS26750 WP_405716847.1 5975255..5976466(+) (pilA) [Streptomyces sp. NBC_00046]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPREEPRRTIEEVGPSEAGAPAEEAP
EAVEPEAPAAPALEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVTPTQELVERLR
ERVRVLGTRTPEGLRALLREELLNLLGTDFDRAVKTEGGLDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAAD
TFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPL
DEVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDAL
IGD

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=657823 OHV04_RS26750 WP_405716847.1 5975255..5976466(+) (pilA) [Streptomyces sp. NBC_00046]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCCCATGTCGGCGAGGAAGCCG
AGACGCCGCGCGAGGAACCGCGCCGCACCATCGAGGAGGTCGGCCCCTCCGAGGCCGGGGCTCCCGCCGAGGAGGCCCCC
GAGGCCGTCGAGCCGGAGGCGCCCGCCGCCCCCGCCCTCGAAGTGCCCGAGCCCACCGCCGGCCGGCTCGTACGGCTGCG
CGCCCGGCTCGCCCGATCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGTGACAACCTCGACGAGGACA
CCTGGGAGGAGATCGAGGACACCCTCCTCACCGCCGACGTCGGCGTCACGCCCACCCAGGAACTGGTGGAGCGGCTCCGC
GAGCGCGTCCGCGTGCTCGGCACCCGTACCCCCGAGGGGCTGCGCGCGCTGCTGCGCGAGGAGCTCCTCAACCTGCTCGG
CACCGACTTCGACCGTGCGGTCAAGACGGAGGGCGGCCTCGATACCCCCGGCGTCGTGATGGTCGTCGGCGTCAACGGAA
CCGGCAAGACCACCACCACTGGCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCCGAC
ACCTTCCGGGCGGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGCGGCCCCGAGGG
CGGCGACCCCGCCTCGATCGCCTTCGACGCGGTGAAGGAGGGCATCGCCGAGGGCGCCGATGTGGTCCTCATCGACACCG
CAGGACGGCTGCACACCAAGACCGGGCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTCGAGAAGCACGGGCCGCTC
GACGAGGTCCTGCTCGTCCTCGACGCCACGACCGGTCAGAACGGTCTGGTGCAGGCCCGGGTGTTCGCCGAGGTCGTGGA
CATCACCGGCATCGTGCTCACCAAGCTGGACGGAACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGCTGGGCG
TGCCGGTGAAGCTGGTCGGACTGGGTGAGGGCCCGGACGACCTGGCCCCGTTCGAGCCGGAGGCGTTCGTGGACGCACTG
ATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(117-182)

SRP54-type protein, GTPase domain (SRP54)

(204-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.099

88.089

0.38