Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LY266_RS22715 Genome accession   NZ_CP092463
Coordinates   4720750..4721274 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii strain Cf7308     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4708442..4720529 4720750..4721274 flank 221


Gene organization within MGE regions


Location: 4708442..4721274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY266_RS22675 (LY266_22675) - 4708442..4711108 (-) 2667 WP_053034689.1 TrlF family AAA-like ATPase -
  LY266_RS22680 (LY266_22680) - 4711101..4712498 (-) 1398 WP_053034690.1 restriction endonuclease subunit S -
  LY266_RS22685 (LY266_22685) - 4712495..4714915 (-) 2421 WP_053034691.1 type I restriction-modification system subunit M -
  LY266_RS22690 (LY266_22690) - 4714968..4715207 (-) 240 WP_053034692.1 hypothetical protein -
  LY266_RS22695 (LY266_22695) - 4715297..4715773 (-) 477 WP_103848870.1 protein kinase -
  LY266_RS22700 (LY266_22700) - 4715766..4717775 (-) 2010 WP_249455381.1 integrase -
  LY266_RS22705 (LY266_22705) - 4717768..4719351 (-) 1584 WP_053034695.1 tyrosine-type recombinase/integrase -
  LY266_RS22710 (LY266_22710) - 4719357..4720529 (-) 1173 WP_053034696.1 tyrosine-type recombinase/integrase -
  LY266_RS22715 (LY266_22715) ssb 4720750..4721274 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=657823 LY266_RS22715 WP_003826621.1 4720750..4721274(-) (ssb) [Citrobacter freundii strain Cf7308]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=657823 LY266_RS22715 WP_003826621.1 4720750..4721274(-) (ssb) [Citrobacter freundii strain Cf7308]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAATCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5