Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MJX77_RS06490 Genome accession   NZ_CP092454
Coordinates   1374535..1375125 (+) Length   196 a.a.
NCBI ID   WP_005300710.1    Uniprot ID   A0AAJ1UPT4
Organism   Acinetobacter sp. AHP123     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1369535..1380125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS06465 - 1369605..1370411 (-) 807 WP_252060935.1 SDR family oxidoreductase -
  MJX77_RS06470 - 1370515..1370886 (-) 372 WP_107880474.1 MerR family transcriptional regulator -
  MJX77_RS06475 tenA 1370952..1371626 (-) 675 WP_004789986.1 thiaminase II -
  MJX77_RS06480 - 1371889..1372971 (+) 1083 WP_005300706.1 DUF475 domain-containing protein -
  MJX77_RS06485 - 1373119..1374483 (+) 1365 WP_005300707.1 MFS transporter -
  MJX77_RS06490 ssb 1374535..1375125 (+) 591 WP_005300710.1 single-stranded DNA-binding protein Machinery gene
  MJX77_RS06495 - 1375167..1375490 (-) 324 WP_144732607.1 AzlD domain-containing protein -
  MJX77_RS06500 - 1375487..1376182 (-) 696 WP_107880477.1 AzlC family ABC transporter permease -
  MJX77_RS06505 - 1376251..1376799 (+) 549 WP_252060937.1 XRE family transcriptional regulator -
  MJX77_RS06510 - 1377127..1378569 (+) 1443 WP_151768127.1 amino acid permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21208.98 Da        Isoelectric Point: 6.4832

>NTDB_id=657720 MJX77_RS06490 WP_005300710.1 1374535..1375125(+) (ssb) [Acinetobacter sp. AHP123]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNNGGGYGGQ
GGFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=657720 MJX77_RS06490 WP_005300710.1 1374535..1375125(+) (ssb) [Acinetobacter sp. AHP123]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GCTGACTCAATTTTCAATCGCAACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAGCGTAAAGAACAAACTGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGTGAAATTGCTCAGCAGTTCCTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGCCAGTGGACTGATCAAAATGGCCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTCAACCAACCACGTTTTAATGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGCCAAAACAATGGCGGTGGTTATGGTGGCCAA
GGTGGTTTCGGTAATGGTGGCAACAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCTGCGTCTGCACC
AGCTGATTTAGACGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.971

100

0.536
  ssb Vibrio cholerae strain A1552

44.118

100

0.459
  ssb Neisseria meningitidis MC58

38.191

100

0.388
  ssb Neisseria gonorrhoeae MS11

37.688

100

0.383