Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I9P40_RS21375 Genome accession   NZ_CP092442
Coordinates   4493120..4493644 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter portucalensis strain Sb-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4488120..4498644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9P40_RS21355 (I9P40_10650) soxR 4489762..4490220 (-) 459 WP_003826630.1 redox-sensitive transcriptional activator SoxR -
  I9P40_RS21360 (I9P40_10645) soxS 4490307..4490630 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  I9P40_RS21365 (I9P40_10640) - 4490633..4492219 (-) 1587 WP_149607436.1 EAL domain-containing protein -
  I9P40_RS21370 (I9P40_10635) - 4492772..4493053 (+) 282 WP_003826625.1 YjcB family protein -
  I9P40_RS21375 (I9P40_10630) ssb 4493120..4493644 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I9P40_RS21380 (I9P40_10625) uvrA 4493896..4496718 (+) 2823 WP_003826619.1 excinuclease ABC subunit UvrA -
  I9P40_RS21385 (I9P40_10620) - 4497101..4497457 (-) 357 WP_008786927.1 MmcQ/YjbR family DNA-binding protein -
  I9P40_RS21390 (I9P40_10615) aphA 4497585..4498298 (-) 714 WP_003826615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=657506 I9P40_RS21375 WP_003826621.1 4493120..4493644(-) (ssb) [Citrobacter portucalensis strain Sb-2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=657506 I9P40_RS21375 WP_003826621.1 4493120..4493644(-) (ssb) [Citrobacter portucalensis strain Sb-2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACAGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGCCCGCAACAGTCAGCGCCGGCAGCACCG
TCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5