Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MJO52_RS02720 Genome accession   NZ_CP092418
Coordinates   606450..607037 (+) Length   195 a.a.
NCBI ID   WP_252084431.1    Uniprot ID   -
Organism   Microbulbifer variabilis strain SCSIO 43006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 601450..612037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO52_RS02710 (MJO52_02710) - 603610..605016 (+) 1407 WP_252084429.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MJO52_RS02715 (MJO52_02715) - 605107..606288 (+) 1182 WP_252084430.1 MFS transporter -
  MJO52_RS02720 (MJO52_02720) ssb 606450..607037 (+) 588 WP_252084431.1 single-stranded DNA-binding protein Machinery gene
  MJO52_RS02725 (MJO52_02725) - 607052..607900 (+) 849 WP_252084432.1 sugar nucleotide-binding protein -
  MJO52_RS02730 (MJO52_02730) fabB 607967..609190 (-) 1224 WP_252084433.1 beta-ketoacyl-ACP synthase I -
  MJO52_RS02735 (MJO52_02735) fabA 609256..609780 (-) 525 WP_252084434.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  MJO52_RS02740 (MJO52_02740) galU 610057..610905 (+) 849 WP_252084435.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 20990.03 Da        Isoelectric Point: 5.2797

>NTDB_id=657320 MJO52_RS02720 WP_252084431.1 606450..607037(+) (ssb) [Microbulbifer variabilis strain SCSIO 43006]
MARGINKVILIGNLGNDPETKYMPSGGAVTNISLATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGAKVYVE
GSLRTRKWQDKNTGQDRYTTEIVASEMQMLDGRGEQGGFGQGMGGAAMGAAGAAMGSQMGGQQGGYEQQGGFQQGGYQQG
NQGRPAPSNQQQPAQQQSQGPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=657320 MJO52_RS02720 WP_252084431.1 606450..607037(+) (ssb) [Microbulbifer variabilis strain SCSIO 43006]
ATGGCCAGGGGTATCAACAAAGTAATCTTAATTGGCAATCTGGGTAATGACCCGGAAACCAAATATATGCCGAGCGGTGG
TGCGGTTACCAATATCAGCTTAGCCACCAGCGAGAGCTGGAAGGATAAGCAGACTGGCCAGCAGCAGGAGCGCACTGAAT
GGCACCGCGTAGTATTTTTCAACCGCTTGGCAGAGATTGCCGGTGAGTATTTACGTAAAGGTGCAAAGGTCTATGTAGAA
GGTTCGCTGCGCACGCGTAAATGGCAGGATAAGAATACTGGTCAGGATCGCTACACTACGGAGATTGTTGCCAGCGAAAT
GCAAATGCTGGATGGTCGCGGAGAGCAGGGCGGTTTCGGTCAGGGTATGGGCGGTGCCGCAATGGGTGCGGCAGGTGCAG
CTATGGGGAGCCAGATGGGCGGTCAGCAAGGCGGTTACGAACAGCAGGGCGGTTTCCAGCAAGGTGGCTATCAGCAGGGT
AATCAGGGGCGCCCGGCTCCCAGTAACCAACAGCAACCTGCGCAGCAGCAAAGCCAGGGCCCTGCCGGTGGTTTTGATAA
TAGCTTTGACGACGATATCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.03

100

0.538
  ssb Glaesserella parasuis strain SC1401

54.167

98.462

0.533
  ssb Neisseria gonorrhoeae MS11

45.876

99.487

0.456
  ssb Neisseria meningitidis MC58

44.56

98.974

0.441