Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   MJO52_RS01210 Genome accession   NZ_CP092418
Coordinates   259691..260767 (+) Length   358 a.a.
NCBI ID   WP_252084188.1    Uniprot ID   -
Organism   Microbulbifer variabilis strain SCSIO 43006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 254691..265767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO52_RS01200 (MJO52_01200) - 256234..256716 (+) 483 WP_252084186.1 chemotaxis protein CheW -
  MJO52_RS01205 (MJO52_01205) - 256859..259543 (-) 2685 WP_252084187.1 penicillin-binding protein 1A -
  MJO52_RS01210 (MJO52_01210) pilM 259691..260767 (+) 1077 WP_252084188.1 pilus assembly protein PilM Machinery gene
  MJO52_RS01215 (MJO52_01215) - 260769..261359 (+) 591 WP_252084189.1 PilN domain-containing protein -
  MJO52_RS01220 (MJO52_01220) - 261372..261992 (+) 621 WP_252084190.1 type 4a pilus biogenesis protein PilO -
  MJO52_RS01225 (MJO52_01225) - 262043..262519 (+) 477 WP_286037014.1 pilus assembly protein PilP -
  MJO52_RS01230 (MJO52_01230) pilQ 262519..264708 (+) 2190 WP_252084191.1 type IV pilus secretin PilQ -
  MJO52_RS01235 (MJO52_01235) aroK 264708..265229 (+) 522 WP_252085944.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39037.25 Da        Isoelectric Point: 4.3164

>NTDB_id=657318 MJO52_RS01210 WP_252084188.1 259691..260767(+) (pilM) [Microbulbifer variabilis strain SCSIO 43006]
MGIFPFLDKGPKAMLGLDISSTAVKLLELSRNGDKYRVESYAVEPLPPNAVVDKNINDVGATAEAIRKVVRRSKTRLRRA
AVAVSGSAVITKTLEMPADLSDEDLEARIALEADQYIPYPLEEVSLDFEVQGPSERGDDQVEVLLAACRSENIEQRVSAL
GEAELEAGVVDVEAYAIERTYTLLEDQFPPQEQLVVAVVDIGATMSALSVLVDGKTVYTREQLFGGRQLTDEIQRRYGLS
AEEASLAKHQGGSGLPDDYYAEVLEPFRDAVIQQVTRALQFFYSSTSYSDVDYILLSGGVAAMEGLSDLVGEKLGKPTVI
ANPFYKMATSSRVNQQILAKEAPGLMIAAGLAMREKEY

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=657318 MJO52_RS01210 WP_252084188.1 259691..260767(+) (pilM) [Microbulbifer variabilis strain SCSIO 43006]
ATGGGGATTTTCCCTTTTCTGGATAAAGGCCCGAAGGCCATGTTGGGACTCGATATTAGCTCGACCGCAGTAAAGTTGCT
GGAGCTAAGTCGCAATGGTGACAAATATCGGGTCGAAAGTTACGCCGTGGAACCCCTGCCGCCGAATGCGGTAGTGGATA
AGAACATCAATGATGTTGGCGCCACGGCGGAAGCTATCCGCAAGGTAGTGCGCCGTTCCAAAACCCGACTGCGCCGTGCG
GCTGTCGCCGTATCCGGCTCCGCAGTGATCACTAAGACCCTGGAAATGCCCGCTGATCTCTCCGATGAGGATCTGGAAGC
GCGTATTGCCTTGGAAGCAGATCAGTACATTCCCTATCCCCTCGAAGAAGTTAGTCTCGATTTTGAGGTACAGGGGCCAT
CCGAAAGAGGGGATGACCAGGTGGAAGTGTTACTGGCAGCATGCCGCAGCGAAAATATCGAACAGCGGGTTTCCGCCCTC
GGTGAGGCTGAGTTGGAGGCGGGTGTCGTGGATGTGGAAGCTTACGCTATTGAGCGCACTTACACTCTACTGGAAGATCA
GTTTCCTCCCCAAGAGCAGTTGGTTGTTGCGGTAGTGGATATCGGTGCGACTATGAGTGCACTGTCTGTACTGGTTGATG
GCAAGACAGTTTATACACGGGAGCAGCTATTCGGTGGCCGCCAGCTCACCGATGAGATTCAGCGGCGCTACGGCCTCTCC
GCCGAAGAGGCCTCCCTGGCGAAGCACCAGGGTGGCAGCGGATTGCCCGATGACTATTATGCCGAGGTTCTGGAGCCGTT
TCGGGATGCGGTGATTCAGCAAGTCACCCGCGCGCTGCAGTTCTTTTACTCTTCGACTTCCTATAGCGATGTGGATTACA
TATTGCTCAGTGGTGGTGTTGCCGCAATGGAAGGTTTGTCTGATTTGGTCGGTGAAAAACTGGGCAAACCCACAGTGATT
GCCAATCCTTTTTACAAAATGGCTACCTCTTCTCGGGTAAACCAACAGATATTAGCCAAAGAGGCTCCAGGGCTGATGAT
CGCGGCAGGGCTCGCCATGCGGGAGAAGGAGTACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.156

96.648

0.494
  comM Acinetobacter nosocomialis M2

51.156

96.648

0.494
  comM Acinetobacter baylyi ADP1

47.23

95.81

0.453
  pilM Legionella pneumophila strain ERS1305867

42.697

99.441

0.425