Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | MJO57_RS31205 | Genome accession | NZ_CP092417 |
| Coordinates | 6890380..6890904 (+) | Length | 174 a.a. |
| NCBI ID | WP_252021397.1 | Uniprot ID | - |
| Organism | Endozoicomonas sp. SCSIO W0465 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 6849264..6892572 | 6890380..6890904 | within | 0 |
Gene organization within MGE regions
Location: 6849264..6892572
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJO57_RS30970 (MJO57_30840) | istA | 6849264..6850817 (+) | 1554 | WP_252017310.1 | IS21 family transposase | - |
| MJO57_RS30975 (MJO57_30845) | istB | 6850830..6851585 (+) | 756 | WP_252017309.1 | IS21-like element helper ATPase IstB | - |
| MJO57_RS30980 (MJO57_30850) | - | 6851589..6852299 (-) | 711 | WP_252021323.1 | glycosyltransferase | - |
| MJO57_RS30985 (MJO57_30855) | - | 6852434..6853390 (+) | 957 | WP_252017306.1 | IS1595 family transposase | - |
| MJO57_RS30990 (MJO57_30860) | - | 6853652..6854470 (-) | 819 | WP_252021324.1 | hypothetical protein | - |
| MJO57_RS30995 (MJO57_30865) | - | 6854483..6855364 (-) | 882 | WP_252021326.1 | hypothetical protein | - |
| MJO57_RS31000 (MJO57_30870) | - | 6855367..6857460 (-) | 2094 | WP_252021328.1 | hypothetical protein | - |
| MJO57_RS31005 (MJO57_30875) | - | 6857504..6857992 (+) | 489 | WP_252021330.1 | DUF29 domain-containing protein | - |
| MJO57_RS31010 (MJO57_30880) | - | 6857989..6859617 (-) | 1629 | WP_252021331.1 | hypothetical protein | - |
| MJO57_RS31015 (MJO57_30885) | - | 6859624..6861810 (-) | 2187 | WP_252021333.1 | tail fiber protein | - |
| MJO57_RS31020 (MJO57_30890) | - | 6861810..6862166 (-) | 357 | WP_252021335.1 | hypothetical protein | - |
| MJO57_RS31025 (MJO57_30895) | - | 6862166..6862771 (-) | 606 | WP_252021337.1 | hypothetical protein | - |
| MJO57_RS31030 (MJO57_30900) | - | 6862772..6863278 (-) | 507 | WP_371924935.1 | DUF6682 family protein | - |
| MJO57_RS31035 (MJO57_30905) | - | 6863378..6864892 (+) | 1515 | WP_252017330.1 | IS66 family transposase | - |
| MJO57_RS31040 (MJO57_30910) | - | 6864879..6865910 (-) | 1032 | WP_252021341.1 | IS66 family transposase | - |
| MJO57_RS31045 (MJO57_30915) | - | 6866086..6867423 (-) | 1338 | WP_252017304.1 | transposase | - |
| MJO57_RS31050 (MJO57_30920) | - | 6867564..6868043 (+) | 480 | WP_252027143.1 | transposase | - |
| MJO57_RS31055 (MJO57_30925) | - | 6868030..6868968 (-) | 939 | WP_252021343.1 | hypothetical protein | - |
| MJO57_RS31060 (MJO57_30930) | - | 6869204..6870604 (-) | 1401 | WP_252021345.1 | hypothetical protein | - |
| MJO57_RS31065 (MJO57_30935) | - | 6870815..6872176 (-) | 1362 | WP_252017318.1 | ISNCY family transposase | - |
| MJO57_RS31070 (MJO57_30940) | - | 6872228..6872950 (-) | 723 | WP_252021347.1 | hypothetical protein | - |
| MJO57_RS31075 (MJO57_30945) | - | 6873055..6874086 (-) | 1032 | Protein_6222 | IS66 family transposase | - |
| MJO57_RS31080 (MJO57_30950) | - | 6874101..6874577 (-) | 477 | WP_252021348.1 | DUF6444 domain-containing protein | - |
| MJO57_RS31085 (MJO57_30955) | - | 6874576..6874785 (+) | 210 | WP_252021350.1 | hypothetical protein | - |
| MJO57_RS31090 (MJO57_30960) | - | 6874926..6876287 (+) | 1362 | WP_252017318.1 | ISNCY family transposase | - |
| MJO57_RS31095 (MJO57_30965) | - | 6876489..6878003 (-) | 1515 | WP_252021352.1 | hypothetical protein | - |
| MJO57_RS31100 (MJO57_30970) | - | 6877979..6878338 (-) | 360 | WP_252021354.1 | hypothetical protein | - |
| MJO57_RS31105 (MJO57_30975) | - | 6878341..6878589 (-) | 249 | WP_252021356.1 | hypothetical protein | - |
| MJO57_RS31110 (MJO57_30980) | - | 6878592..6878981 (-) | 390 | WP_252027150.1 | 3TM-type holin | - |
| MJO57_RS31115 (MJO57_30985) | - | 6878992..6879390 (-) | 399 | WP_252021358.1 | M15 family metallopeptidase | - |
| MJO57_RS31120 (MJO57_30990) | - | 6879575..6880102 (-) | 528 | WP_252021360.1 | hypothetical protein | - |
| MJO57_RS31125 (MJO57_30995) | - | 6880169..6880492 (-) | 324 | WP_252021361.1 | Ref family recombination enhancement nuclease | - |
| MJO57_RS31130 (MJO57_31000) | - | 6880473..6880877 (-) | 405 | WP_252021363.1 | hypothetical protein | - |
| MJO57_RS31135 (MJO57_31005) | - | 6880909..6881409 (-) | 501 | WP_252021365.1 | DUF1367 family protein | - |
| MJO57_RS31140 (MJO57_31010) | - | 6881498..6882151 (-) | 654 | WP_252021367.1 | replication protein P | - |
| MJO57_RS31145 (MJO57_31015) | - | 6882616..6883269 (-) | 654 | WP_252021369.1 | hypothetical protein | - |
| MJO57_RS31150 (MJO57_31020) | - | 6883472..6884110 (+) | 639 | WP_252021371.1 | LexA family transcriptional regulator | - |
| MJO57_RS31155 (MJO57_31025) | - | 6884451..6884783 (+) | 333 | WP_252021373.1 | hypothetical protein | - |
| MJO57_RS31160 (MJO57_31030) | - | 6884776..6885024 (+) | 249 | WP_252021374.1 | hypothetical protein | - |
| MJO57_RS31165 (MJO57_31035) | - | 6885290..6885697 (+) | 408 | WP_252021376.1 | ERF family protein | - |
| MJO57_RS31170 (MJO57_31040) | - | 6885746..6886186 (+) | 441 | WP_252021387.1 | transposase DNA-binding-containing protein | - |
| MJO57_RS31175 (MJO57_31045) | - | 6886299..6886442 (+) | 144 | WP_252021389.1 | hypothetical protein | - |
| MJO57_RS31180 (MJO57_31050) | - | 6886727..6887377 (+) | 651 | WP_252021391.1 | hypothetical protein | - |
| MJO57_RS31185 (MJO57_31055) | - | 6887378..6888088 (+) | 711 | WP_252019241.1 | transposase | - |
| MJO57_RS31190 (MJO57_31060) | - | 6888296..6888871 (+) | 576 | WP_252017317.1 | IS4 family transposase | - |
| MJO57_RS31195 (MJO57_31065) | - | 6888933..6889355 (+) | 423 | WP_252021393.1 | ERF family protein | - |
| MJO57_RS31200 (MJO57_31070) | - | 6889356..6890267 (+) | 912 | WP_252021395.1 | YqaJ viral recombinase family protein | - |
| MJO57_RS31205 (MJO57_31075) | ssb | 6890380..6890904 (+) | 525 | WP_252021397.1 | single-stranded DNA-binding protein | Machinery gene |
| MJO57_RS31210 (MJO57_31080) | - | 6890925..6891248 (+) | 324 | WP_252021399.1 | hypothetical protein | - |
| MJO57_RS31215 (MJO57_31085) | - | 6891307..6892572 (+) | 1266 | WP_252021401.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 19499.46 Da Isoelectric Point: 6.2363
>NTDB_id=657307 MJO57_RS31205 WP_252021397.1 6890380..6890904(+) (ssb) [Endozoicomonas sp. SCSIO W0465]
MARGINKVILVGNVGQDPVVRFTPGGDAIANISLATSERWKDQHGQQQERTEWHRIVIFGKLTEIAQQLVRKGSKLYIEG
KLQTRKWQDSNGQDRYSTEVVVNGFGGQMQILDKLSDQPAQQYQPREQSPAPSHTGNGNQPQQNQYNNPPNSPQPQQEAQ
PTGGYDDFDDSIPF
MARGINKVILVGNVGQDPVVRFTPGGDAIANISLATSERWKDQHGQQQERTEWHRIVIFGKLTEIAQQLVRKGSKLYIEG
KLQTRKWQDSNGQDRYSTEVVVNGFGGQMQILDKLSDQPAQQYQPREQSPAPSHTGNGNQPQQNQYNNPPNSPQPQQEAQ
PTGGYDDFDDSIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=657307 MJO57_RS31205 WP_252021397.1 6890380..6890904(+) (ssb) [Endozoicomonas sp. SCSIO W0465]
ATGGCCAGAGGCATCAATAAAGTCATTCTTGTAGGTAATGTCGGGCAGGATCCGGTGGTTCGATTCACCCCCGGCGGTGA
TGCGATAGCAAACATCAGCCTTGCCACATCGGAAAGGTGGAAAGACCAGCACGGGCAACAACAGGAAAGAACCGAATGGC
ACCGCATTGTCATCTTCGGCAAGCTGACAGAAATTGCCCAGCAGCTGGTTCGCAAGGGTAGCAAGCTCTACATCGAAGGC
AAGCTCCAGACCCGAAAGTGGCAGGACAGCAATGGTCAGGATCGCTACTCCACCGAAGTCGTTGTGAACGGTTTTGGTGG
GCAAATGCAGATTCTGGATAAATTGAGCGACCAGCCTGCCCAGCAATACCAGCCACGTGAACAAAGTCCAGCGCCATCAC
ATACCGGTAATGGCAATCAGCCTCAGCAAAACCAATACAACAATCCGCCAAATAGCCCACAGCCCCAGCAGGAAGCACAG
CCAACCGGCGGTTATGACGACTTTGATGACTCGATTCCTTTCTGA
ATGGCCAGAGGCATCAATAAAGTCATTCTTGTAGGTAATGTCGGGCAGGATCCGGTGGTTCGATTCACCCCCGGCGGTGA
TGCGATAGCAAACATCAGCCTTGCCACATCGGAAAGGTGGAAAGACCAGCACGGGCAACAACAGGAAAGAACCGAATGGC
ACCGCATTGTCATCTTCGGCAAGCTGACAGAAATTGCCCAGCAGCTGGTTCGCAAGGGTAGCAAGCTCTACATCGAAGGC
AAGCTCCAGACCCGAAAGTGGCAGGACAGCAATGGTCAGGATCGCTACTCCACCGAAGTCGTTGTGAACGGTTTTGGTGG
GCAAATGCAGATTCTGGATAAATTGAGCGACCAGCCTGCCCAGCAATACCAGCCACGTGAACAAAGTCCAGCGCCATCAC
ATACCGGTAATGGCAATCAGCCTCAGCAAAACCAATACAACAATCCGCCAAATAGCCCACAGCCCCAGCAGGAAGCACAG
CCAACCGGCGGTTATGACGACTTTGATGACTCGATTCCTTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
53.073 |
100 |
0.546 |
| ssb | Glaesserella parasuis strain SC1401 |
48.901 |
100 |
0.511 |
| ssb | Neisseria gonorrhoeae MS11 |
40.642 |
100 |
0.437 |
| ssb | Neisseria meningitidis MC58 |
39.267 |
100 |
0.431 |