Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MJO57_RS07205 Genome accession   NZ_CP092417
Coordinates   1691828..1692391 (-) Length   187 a.a.
NCBI ID   WP_252024087.1    Uniprot ID   -
Organism   Endozoicomonas sp. SCSIO W0465     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1686828..1697391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO57_RS07195 (MJO57_07165) - 1688610..1689947 (-) 1338 WP_252017304.1 transposase -
  MJO57_RS07200 (MJO57_07170) - 1690086..1691420 (-) 1335 WP_252024085.1 hypothetical protein -
  MJO57_RS07205 (MJO57_07175) ssb 1691828..1692391 (-) 564 WP_252024087.1 single-stranded DNA-binding protein Machinery gene
  MJO57_RS07210 (MJO57_07180) - 1692596..1693939 (-) 1344 WP_252024089.1 MFS transporter -
  MJO57_RS07215 (MJO57_07185) - 1694641..1694745 (+) 105 Protein_1442 hypothetical protein -
  MJO57_RS07220 (MJO57_07190) - 1695007..1695393 (-) 387 WP_252024100.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20800.85 Da        Isoelectric Point: 5.2044

>NTDB_id=657288 MJO57_RS07205 WP_252024087.1 1691828..1692391(-) (ssb) [Endozoicomonas sp. SCSIO W0465]
MARGVNKVILIGNLGNDPDVRFTPNGSAVANLSLATSESWKDRNTGQQQEKTEWHRVVIFGKLAEIAQQYLRKGSKIYIE
GKLQTRKWQGQDGQDRYTTEIVVDGFSGQMQMLDGRQEGAMGAPMGGGYQQPGTQQQQSYAPQQSQQYGSPQQQQQQQQP
VQSHQQQSAPQPQPAGGFDDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=657288 MJO57_RS07205 WP_252024087.1 1691828..1692391(-) (ssb) [Endozoicomonas sp. SCSIO W0465]
ATGGCTCGAGGCGTAAATAAAGTAATTCTGATTGGTAATCTGGGTAATGATCCGGATGTGCGTTTTACCCCCAATGGCAG
TGCCGTTGCAAACTTGAGTCTGGCGACCAGTGAGTCCTGGAAGGATCGTAATACCGGTCAGCAACAGGAGAAAACGGAGT
GGCACCGGGTTGTTATTTTCGGCAAGCTGGCTGAGATTGCACAACAGTACCTCCGTAAAGGATCAAAAATCTATATCGAA
GGTAAGCTGCAGACACGTAAGTGGCAGGGGCAGGACGGCCAGGACCGATATACTACCGAGATTGTTGTTGATGGATTCAG
TGGTCAGATGCAGATGCTCGATGGCCGTCAGGAAGGTGCCATGGGAGCTCCGATGGGGGGCGGCTATCAACAACCAGGGA
CGCAACAACAGCAGTCTTATGCTCCGCAGCAGTCTCAGCAATACGGATCACCGCAGCAGCAACAGCAACAGCAACAACCG
GTGCAGTCCCATCAACAGCAATCTGCTCCTCAGCCACAGCCAGCCGGTGGCTTTGATGATTTTGATGATGATATCCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.289

100

0.583
  ssb Glaesserella parasuis strain SC1401

52.66

100

0.529
  ssb Neisseria gonorrhoeae MS11

48.148

100

0.487
  ssb Neisseria meningitidis MC58

48.913

98.396

0.481