Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | MJO57_RS01300 | Genome accession | NZ_CP092417 |
| Coordinates | 266242..266760 (-) | Length | 172 a.a. |
| NCBI ID | WP_252022269.1 | Uniprot ID | - |
| Organism | Endozoicomonas sp. SCSIO W0465 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 253299..282281 | 266242..266760 | within | 0 |
Gene organization within MGE regions
Location: 253299..282281
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJO57_RS01225 (MJO57_01225) | - | 253299..254080 (+) | 782 | Protein_240 | exodeoxyribonuclease III | - |
| MJO57_RS01230 (MJO57_01230) | - | 254213..254800 (-) | 588 | WP_252022248.1 | AAA family ATPase | - |
| MJO57_RS01235 (MJO57_01235) | rph | 254887..255603 (-) | 717 | WP_252022250.1 | ribonuclease PH | - |
| MJO57_RS01240 (MJO57_01240) | - | 255767..256624 (+) | 858 | WP_371924744.1 | YicC/YloC family endoribonuclease | - |
| MJO57_RS01245 (MJO57_01245) | - | 256888..257373 (+) | 486 | WP_252022254.1 | integrase arm-type DNA-binding domain-containing protein | - |
| MJO57_RS01250 (MJO57_01250) | istB | 257433..258188 (-) | 756 | WP_252017309.1 | IS21-like element helper ATPase IstB | - |
| MJO57_RS01255 (MJO57_01255) | - | 258201..259013 (-) | 813 | WP_252022256.1 | hypothetical protein | - |
| MJO57_RS32635 | - | 259036..259233 (+) | 198 | Protein_247 | DUF6444 domain-containing protein | - |
| MJO57_RS01265 (MJO57_01265) | - | 259359..260501 (+) | 1143 | WP_252026890.1 | IS66 family transposase | - |
| MJO57_RS01270 (MJO57_01270) | istA | 260522..261370 (-) | 849 | Protein_249 | IS21 family transposase | - |
| MJO57_RS01275 (MJO57_01275) | - | 261569..262396 (+) | 828 | WP_252022258.1 | site-specific integrase | - |
| MJO57_RS01280 (MJO57_01280) | - | 262416..262595 (-) | 180 | WP_252022260.1 | AlpA family transcriptional regulator | - |
| MJO57_RS01285 (MJO57_01285) | - | 262610..263776 (-) | 1167 | WP_252022263.1 | antA/AntB antirepressor family protein | - |
| MJO57_RS01290 (MJO57_01290) | - | 263962..265395 (-) | 1434 | WP_252022265.1 | hypothetical protein | - |
| MJO57_RS01295 (MJO57_01295) | - | 265562..266230 (-) | 669 | WP_252022267.1 | hypothetical protein | - |
| MJO57_RS01300 (MJO57_01300) | ssb | 266242..266760 (-) | 519 | WP_252022269.1 | single-stranded DNA-binding protein | Machinery gene |
| MJO57_RS01305 (MJO57_01305) | rdgC | 266773..267090 (-) | 318 | Protein_256 | recombination-associated protein RdgC | - |
| MJO57_RS01310 (MJO57_01310) | - | 267228..268745 (-) | 1518 | WP_252017502.1 | IS1182 family transposase | - |
| MJO57_RS01315 (MJO57_01315) | rdgC | 268794..269375 (-) | 582 | WP_252022271.1 | recombination-associated protein RdgC | - |
| MJO57_RS01320 (MJO57_01320) | - | 269439..270329 (-) | 891 | WP_252022273.1 | YqaJ viral recombinase family protein | - |
| MJO57_RS01325 (MJO57_01325) | - | 270326..271753 (-) | 1428 | WP_252021044.1 | IS4 family transposase | - |
| MJO57_RS01330 (MJO57_01330) | - | 271864..272715 (-) | 852 | WP_252022275.1 | ERF family protein | - |
| MJO57_RS01335 (MJO57_01335) | - | 272690..273061 (-) | 372 | WP_252022277.1 | hypothetical protein | - |
| MJO57_RS01340 (MJO57_01340) | - | 273054..273389 (-) | 336 | WP_252022279.1 | hypothetical protein | - |
| MJO57_RS01345 (MJO57_01345) | - | 273807..274436 (-) | 630 | WP_252022281.1 | LexA family transcriptional regulator | - |
| MJO57_RS01350 (MJO57_01350) | - | 274605..274772 (+) | 168 | WP_252022282.1 | hypothetical protein | - |
| MJO57_RS01355 (MJO57_01355) | - | 274765..275079 (+) | 315 | WP_252022284.1 | hypothetical protein | - |
| MJO57_RS01360 (MJO57_01360) | - | 275076..275507 (+) | 432 | WP_252022286.1 | hypothetical protein | - |
| MJO57_RS01365 (MJO57_01365) | - | 275474..275785 (-) | 312 | WP_252019089.1 | transposase | - |
| MJO57_RS01370 (MJO57_01370) | - | 275860..276240 (+) | 381 | WP_252022288.1 | DUF6444 domain-containing protein | - |
| MJO57_RS01375 (MJO57_01375) | - | 276377..277654 (+) | 1278 | WP_256493129.1 | IS4 family transposase | - |
| MJO57_RS01380 (MJO57_01380) | - | 277635..278201 (+) | 567 | WP_252022292.1 | transposase | - |
| MJO57_RS01385 (MJO57_01385) | - | 278168..279682 (-) | 1515 | WP_252017330.1 | IS66 family transposase | - |
| MJO57_RS01390 (MJO57_01390) | - | 279768..280217 (-) | 450 | WP_252022294.1 | transposase | - |
| MJO57_RS01395 (MJO57_01395) | - | 280239..280394 (-) | 156 | WP_252022296.1 | hypothetical protein | - |
| MJO57_RS01400 (MJO57_01400) | - | 280559..281056 (-) | 498 | WP_252022298.1 | hypothetical protein | - |
| MJO57_RS01405 (MJO57_01405) | - | 281310..282281 (-) | 972 | WP_252022300.1 | homeobox domain-containing protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19583.60 Da Isoelectric Point: 9.1861
>NTDB_id=657285 MJO57_RS01300 WP_252022269.1 266242..266760(-) (ssb) [Endozoicomonas sp. SCSIO W0465]
MSRGINKVILIGNVGNDPDVRFKPDGAPIANLSIATSEKWLDKQSGQQREKTEWHRVVIFGKTAEIAQQYLKKGSKVYIE
GKLQTRKWQANDGTDRYTTEVIVDGFNGQMQMLDRPDDRSNNSGAQNGYHTPQQQPAQHQQQPNQYQQARNGQQPAPQPQ
AQYDQYDQNIPF
MSRGINKVILIGNVGNDPDVRFKPDGAPIANLSIATSEKWLDKQSGQQREKTEWHRVVIFGKTAEIAQQYLKKGSKVYIE
GKLQTRKWQANDGTDRYTTEVIVDGFNGQMQMLDRPDDRSNNSGAQNGYHTPQQQPAQHQQQPNQYQQARNGQQPAPQPQ
AQYDQYDQNIPF
Nucleotide
Download Length: 519 bp
>NTDB_id=657285 MJO57_RS01300 WP_252022269.1 266242..266760(-) (ssb) [Endozoicomonas sp. SCSIO W0465]
ATGAGCAGAGGCATTAATAAAGTCATCCTGATTGGCAACGTGGGCAATGACCCCGACGTCCGTTTTAAACCGGACGGCGC
TCCCATTGCCAACCTGTCCATCGCCACCAGTGAAAAATGGCTGGATAAACAGTCCGGCCAGCAACGGGAAAAAACCGAGT
GGCACCGCGTTGTGATCTTCGGCAAGACCGCCGAAATTGCCCAGCAGTACCTGAAGAAAGGCAGCAAGGTCTACATCGAA
GGCAAGCTCCAGACTCGGAAGTGGCAGGCCAATGACGGAACGGACCGTTACACCACGGAAGTCATTGTTGACGGCTTCAA
CGGCCAGATGCAGATGCTGGACCGACCAGATGATCGATCAAACAACAGTGGAGCCCAGAACGGCTATCACACTCCACAAC
AACAGCCCGCCCAACATCAGCAGCAACCAAACCAGTACCAGCAGGCTCGTAACGGACAGCAACCTGCCCCCCAACCGCAG
GCACAGTACGACCAATACGACCAGAACATCCCATTTTAA
ATGAGCAGAGGCATTAATAAAGTCATCCTGATTGGCAACGTGGGCAATGACCCCGACGTCCGTTTTAAACCGGACGGCGC
TCCCATTGCCAACCTGTCCATCGCCACCAGTGAAAAATGGCTGGATAAACAGTCCGGCCAGCAACGGGAAAAAACCGAGT
GGCACCGCGTTGTGATCTTCGGCAAGACCGCCGAAATTGCCCAGCAGTACCTGAAGAAAGGCAGCAAGGTCTACATCGAA
GGCAAGCTCCAGACTCGGAAGTGGCAGGCCAATGACGGAACGGACCGTTACACCACGGAAGTCATTGTTGACGGCTTCAA
CGGCCAGATGCAGATGCTGGACCGACCAGATGATCGATCAAACAACAGTGGAGCCCAGAACGGCTATCACACTCCACAAC
AACAGCCCGCCCAACATCAGCAGCAACCAAACCAGTACCAGCAGGCTCGTAACGGACAGCAACCTGCCCCCCAACCGCAG
GCACAGTACGACCAATACGACCAGAACATCCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.556 |
100 |
0.581 |
| ssb | Glaesserella parasuis strain SC1401 |
46.703 |
100 |
0.494 |
| ssb | Neisseria gonorrhoeae MS11 |
41.573 |
100 |
0.43 |
| ssb | Neisseria meningitidis MC58 |
41.243 |
100 |
0.424 |