Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   MID13_RS06085 Genome accession   NZ_CP092384
Coordinates   1331408..1331989 (+) Length   193 a.a.
NCBI ID   WP_060982740.1    Uniprot ID   A0A5M9P1L9
Organism   Vibrio gigantis strain ACE001     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326408..1336989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS06065 (MID13_06065) panP 1326706..1328349 (-) 1644 WP_239717838.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  MID13_RS06070 (MID13_06070) - 1328469..1328996 (-) 528 WP_048658401.1 hypothetical protein -
  MID13_RS06075 (MID13_06075) - 1329171..1330076 (-) 906 WP_086713101.1 lysine exporter LysO family protein -
  MID13_RS06080 (MID13_06080) - 1330131..1331051 (-) 921 WP_086713102.1 HDOD domain-containing protein -
  MID13_RS06085 (MID13_06085) tfoX 1331408..1331989 (+) 582 WP_060982740.1 TfoX/Sxy family DNA transformation protein Regulator
  MID13_RS06090 (MID13_06090) - 1332136..1332678 (-) 543 WP_060467931.1 hypothetical protein -
  MID13_RS06095 (MID13_06095) - 1332976..1333473 (-) 498 WP_086713103.1 response regulator -
  MID13_RS06100 (MID13_06100) - 1333466..1335409 (-) 1944 WP_239717839.1 ATP-binding protein -
  MID13_RS06105 (MID13_06105) - 1335594..1336856 (+) 1263 WP_239717840.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22219.62 Da        Isoelectric Point: 8.6179

>NTDB_id=657080 MID13_RS06085 WP_060982740.1 1331408..1331989(+) (tfoX) [Vibrio gigantis strain ACE001]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEGCLFIRGGKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDCIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVREAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=657080 MID13_RS06085 WP_060982740.1 1331408..1331989(+) (tfoX) [Vibrio gigantis strain ACE001]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAGCATCAAAAACGTTCTATGTTTGGAGGTATTGGCCT
CTTTCAAAATGACGCGATGTTCGCTTTATTGAGTGAAGGTTGTTTATTCATTAGAGGTGGAAAGTCATTAGATAAGAAAC
TGACGGATCTTGATTGTGAAAAGTATCGTCATGTAAAAAAGCAGACAACAGCAACCGTAAACTATTACGACATTACGGAT
CTGTTTACGTGTGAACATCCTGAATTGGATTGTATTATTCGTACTTCAATCGATAATTCAATTCAGCAGCGTAGCTTCAA
GAAATCATCAGCTAGCCGTAGATTAAGAGATCTACCAAATATGCAGCTCACATTAGAGCGTATGGTTAAAAAGGCGGGTG
TGGATGATGTTTCAATGTTTATGCAGTTGGGCGCGCCTGAAGTGTTTAATAAGGTTCGCGAAGCGTACGGAAACGATGTT
GACCTAAAACTACTTTGGAAATTTGCGGGTGCAATTGACGGTATTCACTGGAAACTATTGCAAGAGCCACGCAAGCAGCA
ATTACTAAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9P1L9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.575

100

0.736
  tfoX Vibrio cholerae strain A1552

73.575

100

0.736
  tfoX Vibrio campbellii strain DS40M4

70.466

100

0.705
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.466

100

0.705
  tfoX Aliivibrio fischeri ES114

57.368

98.446

0.565