Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MID01_RS22175 Genome accession   NZ_CP092369
Coordinates   4247334..4247852 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain ZW     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4242334..4252852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID01_RS22145 (MID01_22145) yyaJ 4242839..4244193 (+) 1355 Protein_4317 MFS transporter -
  MID01_RS22150 (MID01_22150) maa 4244227..4244781 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  MID01_RS22155 (MID01_22155) yyaH 4244797..4245177 (-) 381 WP_015715075.1 VOC family protein -
  MID01_RS22160 (MID01_22160) ccpB 4245233..4246168 (-) 936 WP_015715076.1 transcriptional regulator CcpB -
  MID01_RS22165 (MID01_22165) xth 4246228..4246986 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  MID01_RS22170 (MID01_22170) rpsR 4247051..4247290 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  MID01_RS22175 (MID01_22175) ssbA 4247334..4247852 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  MID01_RS22180 (MID01_22180) rpsF 4247893..4248180 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  MID01_RS22185 (MID01_22185) ychF 4248291..4249391 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  MID01_RS22190 (MID01_22190) yyaE 4249518..4251521 (-) 2004 WP_015715077.1 molybdopterin-dependent oxidoreductase -
  MID01_RS22195 (MID01_22195) yyzM 4251572..4251778 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=656889 MID01_RS22175 WP_003219228.1 4247334..4247852(-) (ssbA) [Bacillus subtilis strain ZW]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=656889 MID01_RS22175 WP_003219228.1 4247334..4247852(-) (ssbA) [Bacillus subtilis strain ZW]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378