Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MID01_RS12955 Genome accession   NZ_CP092369
Coordinates   2504465..2504800 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain ZW     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2499465..2509800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID01_RS12935 (MID01_12935) gcvT 2500058..2501146 (-) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -
  MID01_RS12940 (MID01_12940) yqhH 2501587..2503260 (+) 1674 WP_041850014.1 SNF2-related protein -
  MID01_RS12945 (MID01_12945) yqhG 2503281..2504075 (+) 795 WP_003230200.1 YqhG family protein -
  MID01_RS12950 (MID01_12950) sinI 2504258..2504431 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  MID01_RS12955 (MID01_12955) sinR 2504465..2504800 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MID01_RS12960 (MID01_12960) tasA 2504893..2505678 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  MID01_RS12965 (MID01_12965) sipW 2505742..2506314 (-) 573 WP_003246088.1 signal peptidase I -
  MID01_RS12970 (MID01_12970) tapA 2506298..2507059 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  MID01_RS12975 (MID01_12975) yqzG 2507331..2507657 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MID01_RS12980 (MID01_12980) spoIIT 2507699..2507878 (-) 180 WP_003230176.1 YqzE family protein -
  MID01_RS12985 (MID01_12985) comGG 2507949..2508323 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  MID01_RS12990 (MID01_12990) comGF 2508324..2508707 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  MID01_RS12995 (MID01_12995) comGE 2508733..2509080 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  MID01_RS13000 (MID01_13000) comGD 2509064..2509495 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  MID01_RS13005 (MID01_13005) comGC 2509485..2509781 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=656853 MID01_RS12955 WP_003226345.1 2504465..2504800(+) (sinR) [Bacillus subtilis strain ZW]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=656853 MID01_RS12955 WP_003226345.1 2504465..2504800(+) (sinR) [Bacillus subtilis strain ZW]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1