Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MIS45_RS08435 Genome accession   NZ_CP092361
Coordinates   1728093..1728665 (+) Length   190 a.a.
NCBI ID   WP_249450201.1    Uniprot ID   -
Organism   Wielerella bovis strain CCUG 44465     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1723093..1733665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS45_RS08410 (MIS45_08410) aqpZ 1723736..1724428 (+) 693 WP_249450198.1 aquaporin Z -
  MIS45_RS08415 (MIS45_08415) - 1724526..1725068 (-) 543 WP_346766869.1 IS630 family transposase -
  MIS45_RS08420 (MIS45_08420) - 1725061..1725363 (-) 303 WP_249441922.1 IS630 transposase-related protein -
  MIS45_RS08425 (MIS45_08425) rfaQ 1725431..1726495 (-) 1065 WP_249450199.1 putative lipopolysaccharide heptosyltransferase III -
  MIS45_RS08430 (MIS45_08430) - 1726703..1728091 (+) 1389 WP_249450200.1 MFS transporter -
  MIS45_RS08435 (MIS45_08435) ssb 1728093..1728665 (+) 573 WP_249450201.1 single-stranded DNA-binding protein Machinery gene
  MIS45_RS08440 (MIS45_08440) - 1729040..1729819 (+) 780 WP_249450202.1 M48 family metallopeptidase -
  MIS45_RS08445 (MIS45_08445) - 1729795..1729989 (-) 195 WP_249442195.1 hypothetical protein -
  MIS45_RS08450 (MIS45_08450) prfA 1730104..1731180 (+) 1077 WP_249450203.1 peptide chain release factor 1 -
  MIS45_RS08455 (MIS45_08455) - 1731300..1731752 (+) 453 WP_249442197.1 hypothetical protein -
  MIS45_RS08460 (MIS45_08460) - 1731864..1732097 (+) 234 WP_249450204.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  MIS45_RS08465 (MIS45_08465) - 1732091..1732501 (+) 411 WP_249445601.1 type II toxin-antitoxin system VapC family toxin -
  MIS45_RS08470 (MIS45_08470) - 1732578..1732739 (+) 162 WP_249450205.1 hypothetical protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21497.64 Da        Isoelectric Point: 5.0178

>NTDB_id=656779 MIS45_RS08435 WP_249450201.1 1728093..1728665(+) (ssb) [Wielerella bovis strain CCUG 44465]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNSGQRQERTEWHNITLYRRQAEVAGQYLRKGSQVYLEGR
IQSRKYIDKQGMERTAYDIICNEMKMLDTRNNQQGGYQQNTYDDGGYNGAYDGAYPQAAPQQSYQAAPPQNYPQQAAYNN
EPPAAPQQRRPAAPVAPAAPVDDIDDDIPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=656779 MIS45_RS08435 WP_249450201.1 1728093..1728665(+) (ssb) [Wielerella bovis strain CCUG 44465]
ATGTCTTTGAATAAAGTGATTTTAATTGGTCGCTTGGGGCGCGACCCAGAAGTGCGTTATATGCCCAATGGCGAAGCGGT
GTGCAATTTTTCGGTTGCGACCAGTGAAACGTGGAACGACCGCAATTCTGGACAACGCCAAGAGCGCACAGAATGGCACA
ATATTACTTTGTATCGCCGTCAAGCCGAAGTGGCTGGGCAATATTTGCGTAAGGGTAGTCAAGTGTATTTGGAAGGACGC
ATTCAATCGCGCAAATACATAGACAAGCAGGGTATGGAGCGCACGGCTTATGATATTATTTGCAATGAAATGAAGATGTT
GGATACCAGAAATAATCAACAAGGTGGCTATCAACAAAATACGTATGATGATGGTGGTTACAATGGTGCTTACGATGGTG
CTTATCCGCAAGCAGCACCACAACAATCGTATCAAGCAGCACCGCCACAAAATTACCCACAACAAGCTGCGTACAATAAT
GAACCGCCTGCTGCACCGCAACAACGCCGTCCTGCTGCACCTGTAGCACCTGCCGCACCTGTTGATGATATTGATGATGA
CATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

68.063

100

0.684
  ssb Neisseria meningitidis MC58

65.789

100

0.658
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.479
  ssb Vibrio cholerae strain A1552

44.271

100

0.447