Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MIS31_RS04555 Genome accession   NZ_CP092360
Coordinates   870255..870815 (-) Length   186 a.a.
NCBI ID   WP_249447415.1    Uniprot ID   -
Organism   Wielerella bovis strain 07LB258     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 865255..875815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS31_RS04530 (MIS31_04530) - 865920..866759 (-) 840 WP_249444782.1 transporter substrate-binding domain-containing protein -
  MIS31_RS04535 (MIS31_04535) - 866907..868187 (-) 1281 WP_249447414.1 LysM domain-containing protein -
  MIS31_RS04540 (MIS31_04540) def 868355..868858 (+) 504 WP_249443465.1 peptide deformylase -
  MIS31_RS04545 (MIS31_04545) - 869270..869572 (+) 303 WP_249442188.1 IS630 transposase-related protein -
  MIS31_RS04550 (MIS31_04550) - 869598..870107 (+) 510 WP_249447679.1 IS630 family transposase -
  MIS31_RS04555 (MIS31_04555) ssb 870255..870815 (-) 561 WP_249447415.1 single-stranded DNA-binding protein Machinery gene
  MIS31_RS04560 (MIS31_04560) - 870817..872205 (-) 1389 WP_249447416.1 MFS transporter -
  MIS31_RS04565 (MIS31_04565) rfaQ 872413..873477 (+) 1065 WP_249447417.1 putative lipopolysaccharide heptosyltransferase III -
  MIS31_RS04570 (MIS31_04570) aqpZ 873645..874337 (-) 693 WP_249447418.1 aquaporin Z -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 21123.25 Da        Isoelectric Point: 5.0178

>NTDB_id=656746 MIS31_RS04555 WP_249447415.1 870255..870815(-) (ssb) [Wielerella bovis strain 07LB258]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNSGQRQERTEWHNITLYRRQAEVAGQYLRKGSQVYLEGR
IQSRKYIDKQGMERTAYDIICNEMKMLDTRNNQQGGYQQNAYDDGGYDGAYPQAAPQQSYQAAQPQNYPQQAAYNNEPPA
APQQRRPATPVAPAAPVDDIDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=656746 MIS31_RS04555 WP_249447415.1 870255..870815(-) (ssb) [Wielerella bovis strain 07LB258]
ATGTCTTTGAATAAAGTGATTTTAATTGGTCGTTTGGGGCGCGACCCAGAAGTGCGTTATATGCCCAATGGCGAAGCGGT
GTGCAATTTTTCGGTTGCGACCAGTGAAACGTGGAACGACCGCAATTCTGGACAACGCCAAGAGCGCACGGAATGGCACA
ATATCACGCTGTATCGCCGTCAAGCCGAAGTGGCAGGGCAATATTTGCGTAAGGGTAGTCAAGTGTATTTGGAAGGACGG
ATTCAATCGCGCAAATACATAGACAAGCAGGGTATGGAGCGCACGGCTTATGATATTATTTGCAATGAAATGAAGATGTT
GGATACCAGAAATAATCAACAAGGCGGCTATCAACAAAATGCGTATGATGATGGCGGTTACGATGGTGCTTATCCGCAAG
CGGCACCACAACAATCGTATCAAGCTGCACAGCCACAAAATTATCCACAACAAGCTGCGTACAATAATGAACCGCCTGCT
GCACCGCAACAACGCCGTCCTGCAACACCTGTTGCACCCGCCGCGCCTGTTGATGATATTGATGATGACATTCCGTTTTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

67.38

100

0.677
  ssb Neisseria meningitidis MC58

65.957

100

0.667
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.484
  ssb Vibrio cholerae strain A1552

45.596

100

0.473