Detailed information NTG0656730

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MIS33_RS09240
• Genome accession: NZ_CP092359
• Coordinates: 1854890..1855789 (-)
• Length: 299 a.a.
• NCBI ID: WP_249442250.1
• Uniprot ID: -
• Organism: Wielerella bovis strain 08LB461
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1849890..1860789

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MIS33_RS09215 (MIS33_09215)	murB	1851239..1852270 (-)	1032	WP_249446591.1	UDP-N-acetylmuramate dehydrogenase	-
MIS33_RS09220 (MIS33_09220)	-	1852286..1852906 (-)	621	WP_249442246.1	L-threonylcarbamoyladenylate synthase	-
MIS33_RS09225 (MIS33_09225)	pncC	1852981..1853460 (-)	480	WP_249442247.1	nicotinamide-nucleotide amidase	-
MIS33_RS09230 (MIS33_09230)	zapD	1853513..1854259 (-)	747	WP_249442248.1	cell division protein ZapD	-
MIS33_RS09235 (MIS33_09235)	coaE	1854272..1854886 (-)	615	WP_249442249.1	dephospho-CoA kinase	-
MIS33_RS09240 (MIS33_09240)	pilD	1854890..1855789 (-)	900	WP_249442250.1	A24 family peptidase	Machinery gene
MIS33_RS09245 (MIS33_09245)	pilG	1855799..1857085 (-)	1287	WP_249446593.1	type II secretion system F family protein	Machinery gene
MIS33_RS09250 (MIS33_09250)	pilF	1857110..1858789 (-)	1680	WP_249442252.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MIS33_RS09255 (MIS33_09255)	-	1858969..1859112 (-)	144	WP_249446594.1	hypothetical protein	-
MIS33_RS09260 (MIS33_09260)	-	1859373..1859753 (-)	381	WP_249446595.1	CrcB family protein	-
MIS33_RS09265 (MIS33_09265)	-	1859750..1860571 (-)	822	WP_249446596.1	ferritin-like domain-containing protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 33306.57 Da
• Isoelectric Point: 8.4696

>NTDB_id=656730 MIS33_RS09240 WP_249442250.1 1854890..1855789(-) (pilD) [Wielerella bovis strain 08LB461]
MDIAIIFAVILGLLIGSFLNVVIYRVPIMLEREWDIAAREQLKLDDKFLNTLPENAAQTVREHIRLTADQTGKFNLITPP
SRCSSCGSPVKPWQNVPIISWLILRGKCHTCKTPISIRYPLVETLTGVLFGLMAWQYGLTVITVGACLFTAFVIALTFID
ADKQILPDTLTLPLVWLGIVFNWYTDFITLQQSVMGAIAGYMSLWTMYHLFKLFTGKEGMGYGDFKILAAIGAWLGTEIL
PMVILASSIVGIIAFVLKRYTRDQAMAFGPCLAVAGWVVFLFHSSAGKAINWWLTKSGF

Nucleotide

• Length: 900 bp

>NTDB_id=656730 MIS33_RS09240 WP_249442250.1 1854890..1855789(-) (pilD) [Wielerella bovis strain 08LB461]
TTGGATATAGCAATTATTTTTGCCGTTATTTTGGGTTTACTCATCGGCAGTTTTTTGAATGTGGTTATTTATCGTGTACC
CATTATGCTGGAACGTGAATGGGATATTGCAGCACGTGAACAGTTAAAATTAGACGATAAATTTCTGAATACGCTGCCTG
AAAATGCAGCACAAACCGTTCGTGAACACATTCGCTTAACTGCCGACCAGACTGGTAAGTTTAACTTAATTACCCCACCT
TCTCGTTGTAGCAGTTGTGGTTCGCCAGTCAAACCTTGGCAAAATGTCCCCATTATCAGTTGGTTGATATTGCGTGGCAA
ATGTCATACCTGTAAAACGCCAATTAGTATTCGCTATCCATTGGTAGAAACACTAACAGGCGTATTATTTGGTTTAATGG
CATGGCAATATGGTTTAACTGTCATTACTGTTGGTGCATGTCTGTTTACTGCATTTGTGATTGCATTAACCTTTATTGAT
GCAGATAAACAAATCCTACCGGATACGCTGACTTTACCATTGGTTTGGTTGGGTATCGTGTTTAACTGGTATACAGATTT
TATTACCTTGCAACAATCAGTAATGGGTGCAATCGCAGGCTATATGAGCTTGTGGACAATGTATCATTTATTCAAATTGT
TTACAGGTAAAGAAGGTATGGGCTATGGCGATTTCAAAATTCTGGCAGCCATCGGTGCATGGCTGGGGACAGAAATTTTG
CCGATGGTTATTTTGGCTTCGTCCATTGTTGGTATCATCGCTTTTGTGCTCAAACGATATACACGCGACCAAGCTATGGC
TTTTGGTCCCTGTTTGGCTGTGGCAGGTTGGGTCGTATTTTTGTTCCATAGTTCAGCAGGAAAAGCAATTAACTGGTGGC
TGACTAAATCAGGATTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (10-137)

• Type IV leader peptidase family (Peptidase_A24) (148-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	52.56	97.993	0.515
pilD	Vibrio campbellii strain DS40M4	45.455	99.331	0.452
pilD	Vibrio cholerae strain A1552	44.068	98.662	0.435
pilD	Acinetobacter baumannii D1279779	43.158	95.318	0.411
pilD	Acinetobacter nosocomialis M2	42.807	95.318	0.408