Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MIS33_RS08900 Genome accession   NZ_CP092359
Coordinates   1779885..1780445 (+) Length   186 a.a.
NCBI ID   WP_249447415.1    Uniprot ID   -
Organism   Wielerella bovis strain 08LB461     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1774885..1785445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS33_RS08885 (MIS33_08885) aqpZ 1776363..1777055 (+) 693 WP_249447418.1 aquaporin Z -
  MIS33_RS08890 (MIS33_08890) rfaQ 1777223..1778287 (-) 1065 WP_249447417.1 putative lipopolysaccharide heptosyltransferase III -
  MIS33_RS08895 (MIS33_08895) - 1778495..1779883 (+) 1389 WP_249447416.1 MFS transporter -
  MIS33_RS08900 (MIS33_08900) ssb 1779885..1780445 (+) 561 WP_249447415.1 single-stranded DNA-binding protein Machinery gene
  MIS33_RS08905 (MIS33_08905) - 1780593..1781135 (-) 543 WP_346766869.1 IS630 family transposase -
  MIS33_RS08910 (MIS33_08910) - 1781128..1781430 (-) 303 WP_249442188.1 IS630 transposase-related protein -
  MIS33_RS08915 (MIS33_08915) - 1781714..1782493 (+) 780 WP_249442194.1 M48 family metallopeptidase -
  MIS33_RS08920 (MIS33_08920) - 1782469..1782663 (-) 195 WP_249442195.1 hypothetical protein -
  MIS33_RS08925 (MIS33_08925) prfA 1782778..1783854 (+) 1077 WP_249446558.1 peptide chain release factor 1 -
  MIS33_RS08930 (MIS33_08930) - 1783945..1785261 (+) 1317 WP_249446559.1 FRG domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 21123.25 Da        Isoelectric Point: 5.0178

>NTDB_id=656729 MIS33_RS08900 WP_249447415.1 1779885..1780445(+) (ssb) [Wielerella bovis strain 08LB461]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNSGQRQERTEWHNITLYRRQAEVAGQYLRKGSQVYLEGR
IQSRKYIDKQGMERTAYDIICNEMKMLDTRNNQQGGYQQNAYDDGGYDGAYPQAAPQQSYQAAQPQNYPQQAAYNNEPPA
APQQRRPATPVAPAAPVDDIDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=656729 MIS33_RS08900 WP_249447415.1 1779885..1780445(+) (ssb) [Wielerella bovis strain 08LB461]
ATGTCTTTGAATAAAGTGATTTTAATTGGTCGTTTGGGGCGCGACCCAGAAGTGCGTTATATGCCCAATGGCGAAGCGGT
GTGCAATTTTTCGGTTGCGACCAGTGAAACGTGGAACGACCGCAATTCTGGACAACGCCAAGAGCGCACGGAATGGCACA
ATATCACGCTGTATCGCCGTCAAGCCGAAGTGGCAGGGCAATATTTGCGTAAGGGTAGTCAAGTGTATTTGGAAGGACGG
ATTCAATCGCGCAAATACATAGACAAGCAGGGTATGGAGCGCACGGCTTATGATATTATTTGCAATGAAATGAAGATGTT
GGATACCAGAAATAATCAACAAGGCGGCTATCAACAAAATGCGTATGATGATGGCGGTTACGATGGTGCTTATCCGCAAG
CGGCACCACAACAATCGTATCAAGCTGCACAGCCACAAAATTATCCACAACAAGCTGCGTACAATAATGAACCGCCTGCT
GCACCGCAACAACGCCGTCCTGCAACACCTGTTGCACCCGCCGCGCCTGTTGATGATATTGATGATGACATTCCGTTTTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

67.38

100

0.677
  ssb Neisseria meningitidis MC58

65.957

100

0.667
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.484
  ssb Vibrio cholerae strain A1552

45.596

100

0.473