Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MIS44_RS09150 Genome accession   NZ_CP092357
Coordinates   1810348..1810908 (+) Length   186 a.a.
NCBI ID   WP_249448326.1    Uniprot ID   -
Organism   Wielerella bovis strain 10LB456     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1805348..1815908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS44_RS09135 (MIS44_09135) aqpZ 1806826..1807518 (+) 693 WP_249448323.1 aquaporin Z -
  MIS44_RS09140 (MIS44_09140) rfaQ 1807686..1808750 (-) 1065 WP_249448324.1 putative lipopolysaccharide heptosyltransferase III -
  MIS44_RS09145 (MIS44_09145) - 1808958..1810346 (+) 1389 WP_249448325.1 MFS transporter -
  MIS44_RS09150 (MIS44_09150) ssb 1810348..1810908 (+) 561 WP_249448326.1 single-stranded DNA-binding protein Machinery gene
  MIS44_RS09155 (MIS44_09155) - 1811283..1812062 (+) 780 WP_249448327.1 M48 family metallopeptidase -
  MIS44_RS09160 (MIS44_09160) prfA 1812497..1813590 (+) 1094 Protein_1778 peptide chain release factor 1 -
  MIS44_RS09165 (MIS44_09165) - 1813710..1814162 (+) 453 WP_249442197.1 hypothetical protein -
  MIS44_RS09170 (MIS44_09170) - 1814274..1814507 (+) 234 WP_249448328.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  MIS44_RS09175 (MIS44_09175) - 1814501..1814911 (+) 411 WP_249448329.1 type II toxin-antitoxin system VapC family toxin -
  MIS44_RS09180 (MIS44_09180) - 1814930..1815148 (+) 219 WP_249448330.1 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 21120.29 Da        Isoelectric Point: 5.0178

>NTDB_id=656682 MIS44_RS09150 WP_249448326.1 1810348..1810908(+) (ssb) [Wielerella bovis strain 10LB456]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNSGQRQERTEWHNITLYRRQAEVAGQYLRKGSQVYLEGR
IQSRKYIDKQGMERTAYDIICNEMKMLDTRNNQQGGYQQNAYDDGGYDGAYPQVAPQQSYQAAPPQNYPQQAAYNNEPPA
APQQRRPATPVAPAAPVDDIDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=656682 MIS44_RS09150 WP_249448326.1 1810348..1810908(+) (ssb) [Wielerella bovis strain 10LB456]
ATGTCTTTGAATAAAGTGATTTTAATTGGTCGTTTGGGGCGCGACCCAGAAGTGCGTTATATGCCCAATGGCGAAGCGGT
GTGCAATTTTTCGGTTGCGACCAGCGAAACGTGGAACGACCGCAATTCTGGACAACGCCAAGAGCGCACGGAATGGCACA
ATATTACTTTGTATCGCCGTCAAGCCGAAGTGGCAGGGCAATATTTGCGTAAGGGTAGTCAAGTGTATTTGGAAGGACGG
ATTCAATCGCGCAAATACATAGACAAGCAGGGTATGGAGCGCACGGCTTATGATATTATTTGCAATGAAATGAAGATGTT
GGATACCAGAAATAATCAACAAGGCGGCTATCAACAAAATGCGTATGATGATGGCGGTTACGATGGTGCTTATCCGCAAG
TAGCACCACAACAATCGTATCAAGCTGCACCGCCACAAAATTATCCACAACAAGCTGCGTACAATAATGAACCGCCTGCT
GCACCGCAACAACGCCGTCCTGCAACACCTGTTGCACCCGCCGCGCCTGTTGATGATATTGATGATGACATTCCGTTTTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

68.085

100

0.688
  ssb Neisseria meningitidis MC58

65.957

100

0.667
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.478
  ssb Vibrio cholerae strain A1552

44.041

100

0.457