Detailed information NTG0656671

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MIS44_RS04775
• Genome accession: NZ_CP092357
• Coordinates: 894072..894971 (+)
• Length: 299 a.a.
• NCBI ID: WP_249442250.1
• Uniprot ID: -
• Organism: Wielerella bovis strain 10LB456
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 889072..899971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MIS44_RS04755 (MIS44_04755)	-	889256..890077 (+)	822	WP_249449585.1	ferritin-like domain-containing protein	-
MIS44_RS04760 (MIS44_04760)	-	890074..890454 (+)	381	WP_249449353.1	CrcB family protein	-
MIS44_RS04765 (MIS44_04765)	pilF	891072..892751 (+)	1680	WP_249449354.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MIS44_RS04770 (MIS44_04770)	pilG	892776..894062 (+)	1287	WP_249446593.1	type II secretion system F family protein	Machinery gene
MIS44_RS04775 (MIS44_04775)	pilD	894072..894971 (+)	900	WP_249442250.1	A24 family peptidase	Machinery gene
MIS44_RS04780 (MIS44_04780)	coaE	894975..895589 (+)	615	WP_249449355.1	dephospho-CoA kinase	-
MIS44_RS04785 (MIS44_04785)	zapD	895602..896348 (+)	747	WP_249442248.1	cell division protein ZapD	-
MIS44_RS04790 (MIS44_04790)	pncC	896401..896880 (+)	480	WP_249449356.1	nicotinamide-nucleotide amidase	-
MIS44_RS04795 (MIS44_04795)	-	896955..897575 (+)	621	WP_249449357.1	L-threonylcarbamoyladenylate synthase	-
MIS44_RS04800 (MIS44_04800)	murB	897591..898622 (+)	1032	WP_249449358.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 33306.57 Da
• Isoelectric Point: 8.4696

>NTDB_id=656671 MIS44_RS04775 WP_249442250.1 894072..894971(+) (pilD) [Wielerella bovis strain 10LB456]
MDIAIIFAVILGLLIGSFLNVVIYRVPIMLEREWDIAAREQLKLDDKFLNTLPENAAQTVREHIRLTADQTGKFNLITPP
SRCSSCGSPVKPWQNVPIISWLILRGKCHTCKTPISIRYPLVETLTGVLFGLMAWQYGLTVITVGACLFTAFVIALTFID
ADKQILPDTLTLPLVWLGIVFNWYTDFITLQQSVMGAIAGYMSLWTMYHLFKLFTGKEGMGYGDFKILAAIGAWLGTEIL
PMVILASSIVGIIAFVLKRYTRDQAMAFGPCLAVAGWVVFLFHSSAGKAINWWLTKSGF

Nucleotide

• Length: 900 bp

>NTDB_id=656671 MIS44_RS04775 WP_249442250.1 894072..894971(+) (pilD) [Wielerella bovis strain 10LB456]
TTGGATATAGCAATTATTTTTGCCGTTATTTTGGGTTTACTCATCGGCAGTTTTTTGAATGTGGTTATTTATCGTGTACC
CATTATGCTGGAACGTGAATGGGATATTGCAGCACGTGAACAGTTAAAATTAGACGATAAATTTCTGAATACGCTGCCTG
AAAATGCAGCACAAACCGTTCGTGAACACATTCGCTTAACTGCCGACCAGACTGGTAAGTTTAACTTAATTACCCCACCT
TCTCGTTGTAGCAGTTGTGGTTCGCCAGTCAAACCTTGGCAAAATGTCCCCATTATCAGTTGGTTGATATTGCGTGGCAA
ATGTCATACCTGTAAAACGCCAATTAGTATTCGCTATCCATTGGTAGAAACACTAACAGGCGTATTATTTGGTTTAATGG
CATGGCAATATGGTTTAACTGTCATTACTGTTGGTGCATGTCTGTTTACTGCATTTGTGATTGCATTAACCTTTATTGAT
GCAGATAAACAAATCCTACCGGATACGCTGACTTTACCATTGGTTTGGTTGGGTATCGTGTTTAACTGGTATACAGATTT
TATTACCTTGCAACAATCAGTAATGGGTGCAATCGCAGGCTATATGAGCTTGTGGACAATGTATCATTTATTCAAATTGT
TTACAGGTAAAGAAGGCATGGGCTATGGCGATTTCAAAATTCTGGCAGCCATCGGTGCATGGCTGGGGACAGAAATTTTG
CCGATGGTTATTTTGGCTTCGTCCATTGTTGGTATCATCGCTTTTGTGCTCAAACGATATACACGCGACCAAGCTATGGC
TTTTGGTCCCTGTTTGGCTGTGGCAGGTTGGGTCGTATTTTTGTTCCATAGTTCAGCAGGAAAAGCAATTAACTGGTGGC
TGACTAAATCAGGATTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (10-137)

• Type IV leader peptidase family (Peptidase_A24) (148-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	52.56	97.993	0.515
pilD	Vibrio campbellii strain DS40M4	45.455	99.331	0.452
pilD	Vibrio cholerae strain A1552	44.068	98.662	0.435
pilD	Acinetobacter baumannii D1279779	43.158	95.318	0.411
pilD	Acinetobacter nosocomialis M2	42.807	95.318	0.408