Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MF410_RS08140 Genome accession   NZ_CP092348
Coordinates   1414858..1415364 (-) Length   168 a.a.
NCBI ID   WP_003586486.1    Uniprot ID   A0AAE5WPB6
Organism   Rhizobium sp. C104     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1409858..1420364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF410_RS08120 (MF410_08125) - 1410143..1410421 (+) 279 WP_097628909.1 hypothetical protein -
  MF410_RS08125 (MF410_08130) - 1410564..1410719 (+) 156 WP_003539654.1 hypothetical protein -
  MF410_RS08130 (MF410_08135) gyrA 1411054..1413876 (-) 2823 WP_097628910.1 DNA gyrase subunit A -
  MF410_RS08135 (MF410_08140) - 1414127..1414774 (+) 648 WP_097628911.1 MarC family protein -
  MF410_RS08140 (MF410_08145) ssb 1414858..1415364 (-) 507 WP_003586486.1 single-stranded DNA-binding protein Machinery gene
  MF410_RS08145 (MF410_08150) uvrA 1415648..1418569 (+) 2922 WP_097628912.1 excinuclease ABC subunit UvrA -
  MF410_RS08150 (MF410_08155) - 1418566..1419027 (+) 462 WP_097628913.1 GNAT family N-acetyltransferase -
  MF410_RS08155 (MF410_08160) - 1419052..1419858 (+) 807 WP_097628914.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18142.85 Da        Isoelectric Point: 5.3175

>NTDB_id=656630 MF410_RS08140 WP_003586486.1 1414858..1415364(-) (ssb) [Rhizobium sp. C104]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASSGGGRGSSNNDYGDDYGAPAPSSSPSRGGGGGNFSR
DLDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=656630 MF410_RS08140 WP_003586486.1 1414858..1415364(-) (ssb) [Rhizobium sp. C104]
ATGGCTGGTAGCGTAAACAAGGTAATTCTGATTGGAAACGTCGGTGCGGACCCCGAAATCCGCCGCACGCAGGATGGCCG
GCCGATCGCCAATCTCCGTATCGCGACCTCGGAGACCTGGCGTGACCGCAATTCCGGCGAGCGCCGTGAGAAGACCGAAT
GGCACACGGTCGTCGTCTTCAACGAAGGCCTTTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGACCGCTACTCGACGGAAGTGGTGCTGCAGGGCTT
CGGTTCGACCCTGACCATGCTCGACGGCCGCGGCGAAGGCGGCGGTGCAAGCTCCGGCGGCGGCCGAGGCAGCAGCAACA
ATGATTATGGCGATGACTACGGCGCCCCGGCTCCCTCTTCATCGCCGAGCCGCGGCGGTGGCGGCGGTAATTTCTCGCGC
GATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.425

100

0.512
  ssb Glaesserella parasuis strain SC1401

43.684

100

0.494
  ssb Neisseria gonorrhoeae MS11

40

100

0.429
  ssb Neisseria meningitidis MC58

37.989

100

0.405