Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L2W42_RS07055 Genome accession   NZ_CP092344
Coordinates   1449593..1450111 (-) Length   172 a.a.
NCBI ID   WP_022715584.1    Uniprot ID   A0A559SNQ4
Organism   Rhizobium gallicum strain M101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1444593..1455111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2W42_RS07040 (L2W42_07040) - 1446490..1447122 (+) 633 WP_239598833.1 MarC family protein -
  L2W42_RS07045 (L2W42_07045) - 1447265..1448080 (+) 816 WP_074068102.1 chromate resistance protein ChrB domain-containing protein -
  L2W42_RS07050 (L2W42_07050) chrA 1448095..1449498 (+) 1404 WP_239598835.1 chromate efflux transporter -
  L2W42_RS07055 (L2W42_07055) ssb 1449593..1450111 (-) 519 WP_022715584.1 single-stranded DNA-binding protein Machinery gene
  L2W42_RS07060 (L2W42_07060) uvrA 1450362..1453284 (+) 2923 Protein_1413 excinuclease ABC subunit UvrA -
  L2W42_RS07065 (L2W42_07065) - 1453332..1454138 (+) 807 WP_194729695.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18475.16 Da        Isoelectric Point: 5.3175

>NTDB_id=656625 L2W42_RS07055 WP_022715584.1 1449593..1450111(-) (ssb) [Rhizobium gallicum strain M101]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQNGNDRYSTEVVLQGFNSTLTMLDGRGEGGGASAGGGRGSSNDFGGGGNYGDDYGAPAQPSGRSSGGGG
NFSRDLDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=656625 L2W42_RS07055 WP_022715584.1 1449593..1450111(-) (ssb) [Rhizobium gallicum strain M101]
ATGGCTGGCAGCGTGAACAAGGTAATTCTGATCGGAAACGTGGGCGCAGACCCCGAAATCCGCAGGACGCAGGACGGCCG
CCCGATTGCCAATCTTCGCATCGCGACGTCCGAGACGTGGCGTGACCGCAATTCCGGCGAGCGCCGCGAAAAAACCGAGT
GGCACACCGTCGTCGTTTTCAACGAAGGTCTCTGCAAGGTTGTCGAGCAATATGTGAAGAAAGGCGCCAAGCTCTATATC
GAAGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGAACGGCAACGACCGCTATTCGACGGAAGTCGTGCTACAGGGGTT
CAATTCGACGCTGACGATGCTCGACGGCCGCGGCGAAGGCGGCGGTGCGAGCGCCGGCGGCGGACGTGGCAGCAGCAACG
ATTTCGGTGGCGGCGGCAATTACGGAGACGATTACGGCGCCCCGGCGCAGCCGTCCGGTCGCAGCAGCGGTGGCGGCGGG
AATTTCTCGCGCGATCTCGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A559SNQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.889

100

0.512
  ssb Glaesserella parasuis strain SC1401

45.026

100

0.5
  ssb Neisseria meningitidis MC58

38.889

100

0.407
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.407