Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MIH17_RS03680 Genome accession   NZ_CP092288
Coordinates   758162..758758 (+) Length   198 a.a.
NCBI ID   WP_249007594.1    Uniprot ID   -
Organism   Marinobacter sp. M2C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 753162..763758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIH17_RS03665 (MIH17_03665) rplQ 753179..753568 (+) 390 WP_249007591.1 50S ribosomal protein L17 -
  MIH17_RS03670 (MIH17_03670) uvrA 753735..756578 (-) 2844 WP_249007592.1 excinuclease ABC subunit UvrA -
  MIH17_RS03675 (MIH17_03675) - 756733..758103 (+) 1371 WP_249007593.1 MFS transporter -
  MIH17_RS03680 (MIH17_03680) ssb 758162..758758 (+) 597 WP_249007594.1 single-stranded DNA-binding protein Machinery gene
  MIH17_RS03685 (MIH17_03685) - 758917..761097 (+) 2181 WP_249007595.1 DUF3141 domain-containing protein -
  MIH17_RS03690 (MIH17_03690) - 761188..761610 (-) 423 WP_249007596.1 BLUF domain-containing protein -
  MIH17_RS03695 (MIH17_03695) - 761614..763326 (-) 1713 WP_249007597.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21838.87 Da        Isoelectric Point: 4.7802

>NTDB_id=656531 MIH17_RS03680 WP_249007594.1 758162..758758(+) (ssb) [Marinobacter sp. M2C]
MARGINKVILIGNLGQDPDTRYTPNGNAVVNLSIATDESYKDRQTGQMVPKTEWHKIVMFGKVAEVAGQYLRKGSKIYVE
GKLQTRKWQNKDGQDVYTTEVVVDISGQMQMLDSRNSDGGGMSQGQGQGQQGQGQPQNRQQQAPARPQNANQSAQDDGGY
NQGYQNDNYNQQPANAPSSPQKNTMPDPVDDFDDDIPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=656531 MIH17_RS03680 WP_249007594.1 758162..758758(+) (ssb) [Marinobacter sp. M2C]
ATGGCACGAGGTATAAACAAAGTCATTCTTATCGGCAACCTGGGACAAGACCCGGATACCCGTTATACCCCCAACGGCAA
CGCCGTGGTAAATCTAAGTATAGCCACCGACGAAAGCTATAAAGATCGCCAAACCGGTCAAATGGTGCCAAAAACCGAAT
GGCATAAAATTGTCATGTTCGGAAAAGTGGCGGAAGTAGCGGGCCAGTACCTGCGCAAAGGCTCGAAGATTTATGTTGAG
GGCAAGCTGCAAACCCGAAAATGGCAGAACAAGGACGGCCAAGACGTTTACACCACCGAAGTGGTGGTGGATATCAGCGG
CCAGATGCAGATGCTGGACAGCCGCAATAGCGACGGCGGTGGTATGAGTCAGGGGCAAGGGCAGGGTCAACAAGGCCAGG
GCCAGCCGCAAAATCGCCAGCAGCAGGCGCCTGCGCGTCCGCAGAATGCCAATCAGTCTGCGCAAGACGATGGCGGCTAT
AATCAGGGCTACCAGAACGACAATTACAATCAGCAACCGGCCAACGCGCCGTCATCGCCGCAGAAAAACACTATGCCGGA
TCCGGTGGATGATTTTGATGATGATATTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.525

100

0.525
  ssb Vibrio cholerae strain A1552

49.254

100

0.5
  ssb Neisseria meningitidis MC58

44.162

99.495

0.439
  ssb Neisseria gonorrhoeae MS11

44.162

99.495

0.439