Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG786_RS15190 Genome accession   NZ_CP108217
Coordinates   3590104..3591228 (-) Length   374 a.a.
NCBI ID   WP_275493219.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3585104..3596228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG786_RS15180 (OG786_15210) gyrB 3586959..3589028 (-) 2070 WP_275493218.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG786_RS15185 (OG786_15215) - 3589481..3589975 (-) 495 WP_275496079.1 DUF721 domain-containing protein -
  OG786_RS15190 (OG786_15220) recF 3590104..3591228 (-) 1125 WP_275493219.1 DNA replication/repair protein RecF Machinery gene
  OG786_RS15195 (OG786_15225) gnd 3591267..3592145 (-) 879 WP_275493220.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OG786_RS15200 (OG786_15230) dnaN 3592302..3593432 (-) 1131 WP_275493221.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40829.45 Da        Isoelectric Point: 6.8620

>NTDB_id=656529 OG786_RS15190 WP_275493219.1 3590104..3591228(-) (recF) [Streptomyces sp. NBC_00101]
MHVTHLSLADFRSYARAEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVVRASVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVVGILRTVLFAPEDLALVKGDPGERRRFLDELVTARTPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDMSTLDVWDQHLARVGAELLAQRLDLIAVLQPLTDKAYGDVAPGGGPVGLEYRSSVDENPA
RTRDELYEQVLAALAGVRKQEIERGVTLVGPHRDDLLLGLRQMPAKGYASHGESWSYALALRLASYELLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPAEQVLVTAAVDDDVPGVLAGTRYEVAAGEVTRL

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=656529 OG786_RS15190 WP_275493219.1 3590104..3591228(-) (recF) [Streptomyces sp. NBC_00101]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGCCGAGGTTCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGGCCAACGGCCAGGGCAAGACCAACCTCGTCGAAGCGGTCGGCTACCTCGCCACCCTCGGCAGCCACCGCG
TCTCCTCGGACGCCCCCCTGGTGCGGATGGGGGCCGAGCGGGCCGTCGTCCGGGCCTCGGTGACCCAGGGCGAGCGCTCC
CAGCTGATCGAACTGGAGCTGAACCCGGGCCGCGCCAACCGCGCCCGGATCAACCGCTCCTCGCAGGTACGGCCCCGTGA
CGTCGTGGGCATCCTGCGGACCGTGCTCTTCGCCCCCGAGGACCTGGCGCTGGTCAAGGGCGACCCCGGGGAGCGGCGCC
GGTTCCTCGACGAACTGGTCACCGCCCGCACACCCCGGATGGCGGGGGTCCGCTCCGACTACGAGCGGGTGCTGAAGCAG
CGCAACACCCTGCTGAAGTCCGCCGCGATGGCCCGCCGCCACGGTGGCCGCTCCATGGACATGTCCACGCTCGACGTCTG
GGACCAGCACCTGGCCCGGGTCGGAGCCGAACTGCTCGCGCAGCGGCTCGACCTGATCGCCGTCCTCCAGCCGCTCACCG
ACAAGGCGTACGGCGACGTCGCACCGGGTGGCGGCCCGGTGGGCCTGGAGTACCGCAGCTCGGTGGACGAGAACCCGGCC
CGCACCCGGGACGAGCTGTACGAGCAGGTGCTGGCCGCGCTCGCCGGCGTACGGAAGCAGGAGATCGAGCGCGGGGTGAC
CCTGGTCGGTCCGCACCGGGACGACCTGCTGCTGGGCCTGCGCCAGATGCCCGCGAAGGGGTACGCGAGCCACGGCGAGT
CATGGTCGTACGCGCTGGCGCTGCGGCTCGCCTCGTACGAGCTGCTGCGGGCGGAGGGCAACGAACCGGTGCTCGTCCTC
GACGACGTCTTCGCCGAACTGGACGCGCGGCGCCGCGAGCGCCTCGCGGAGCTGGTGGCGCCGGCCGAGCAGGTACTGGT
GACGGCCGCCGTGGACGACGACGTGCCGGGGGTCCTCGCGGGCACCCGGTACGAGGTCGCCGCCGGCGAGGTGACCCGGC
TGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361