Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MIH18_RS08915 Genome accession   NZ_CP092284
Coordinates   1939024..1939620 (-) Length   198 a.a.
NCBI ID   WP_249014357.1    Uniprot ID   -
Organism   Marinobacter sp. M3C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1934024..1944620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIH18_RS08900 (MIH18_08895) glnL 1934049..1935191 (+) 1143 WP_249007599.1 nitrogen regulation protein NR(II) -
  MIH18_RS08905 (MIH18_08900) ntrC 1935188..1936612 (+) 1425 WP_249014355.1 nitrogen regulation protein NR(I) -
  MIH18_RS08910 (MIH18_08905) - 1936680..1938860 (-) 2181 WP_249014356.1 DUF3141 domain-containing protein -
  MIH18_RS08915 (MIH18_08910) ssb 1939024..1939620 (-) 597 WP_249014357.1 single-stranded DNA-binding protein Machinery gene
  MIH18_RS08920 (MIH18_08915) - 1939679..1941049 (-) 1371 WP_249014358.1 MFS transporter -
  MIH18_RS08925 (MIH18_08920) uvrA 1941204..1944047 (+) 2844 WP_249014610.1 excinuclease ABC subunit UvrA -
  MIH18_RS08930 (MIH18_08925) rplQ 1944214..1944603 (-) 390 WP_249007591.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21780.83 Da        Isoelectric Point: 4.7802

>NTDB_id=656509 MIH18_RS08915 WP_249014357.1 1939024..1939620(-) (ssb) [Marinobacter sp. M3C]
MARGINKVILIGNLGQDPDTRYTPNGNAVVNLSIATDESYKDRQTGQMVPKTEWHKIVMFGKVAEVAGQYLRKGSKIYVE
GKLQTRKWQNKDGQDVYTTEVVVDISGQMQMLDSRNSDGGGMSQGQGQGQQGQGQPQSRPQQAPARPQNANQSAQDDGGY
NQGYQNDNYNQQPANAPSSPQKNTMPDPVDDFDDDIPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=656509 MIH18_RS08915 WP_249014357.1 1939024..1939620(-) (ssb) [Marinobacter sp. M3C]
ATGGCACGAGGTATAAACAAAGTCATTCTTATCGGCAACCTGGGACAAGACCCGGATACCCGTTATACCCCCAACGGCAA
CGCCGTGGTTAATCTCAGTATAGCCACCGACGAAAGCTATAAAGATCGTCAAACCGGTCAAATGGTGCCAAAAACCGAAT
GGCATAAAATTGTCATGTTCGGCAAAGTGGCGGAAGTAGCGGGCCAGTATCTGCGCAAAGGCTCGAAGATTTATGTTGAA
GGCAAGCTGCAAACCCGAAAATGGCAGAACAAGGACGGCCAAGACGTTTACACCACCGAAGTGGTGGTGGATATCAGCGG
CCAGATGCAGATGCTGGACAGCCGCAATAGCGACGGCGGTGGTATGAGTCAGGGGCAAGGGCAGGGTCAACAAGGCCAGG
GCCAACCGCAAAGTCGCCCTCAGCAGGCGCCTGCGCGTCCGCAGAATGCCAATCAGTCTGCGCAAGACGATGGCGGCTAT
AATCAGGGCTACCAGAACGACAATTACAATCAGCAACCGGCCAACGCGCCGTCATCGCCGCAGAAAAACACTATGCCGGA
TCCGGTGGATGATTTTGATGATGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.525

100

0.525
  ssb Vibrio cholerae strain A1552

49.495

100

0.495
  ssb Neisseria meningitidis MC58

44.162

99.495

0.439
  ssb Neisseria gonorrhoeae MS11

44.162

99.495

0.439