Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MF263_RS19020 Genome accession   NZ_CP092182
Coordinates   4107735..4108250 (-) Length   171 a.a.
NCBI ID   WP_035269622.1    Uniprot ID   A0AAE9H8A3
Organism   Alcaligenes faecalis strain T17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4102735..4113250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF263_RS19005 (MF263_19005) - 4103536..4104036 (+) 501 WP_239054888.1 sigma-70 family RNA polymerase sigma factor -
  MF263_RS19010 (MF263_19010) - 4104057..4104998 (+) 942 WP_239054889.1 FecR family protein -
  MF263_RS19015 (MF263_19015) - 4105078..4107549 (+) 2472 WP_239054890.1 TonB-dependent receptor -
  MF263_RS19020 (MF263_19020) ssb 4107735..4108250 (-) 516 WP_035269622.1 single-stranded DNA-binding protein Machinery gene
  MF263_RS19025 (MF263_19025) - 4108510..4109721 (-) 1212 WP_022983677.1 MFS transporter -
  MF263_RS19030 (MF263_19030) uvrA 4109833..4112796 (+) 2964 WP_226349798.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18816.84 Da        Isoelectric Point: 5.3412

>NTDB_id=656189 MF263_RS19020 WP_035269622.1 4107735..4108250(-) (ssb) [Alcaligenes faecalis strain T17]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGDMGGGSMGGGEYGGGGGAPAPQRAQRPAPQQQQQQQAPRNNAPMSD
NLADMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=656189 MF263_RS19020 WP_035269622.1 4107735..4108250(-) (ssb) [Alcaligenes faecalis strain T17]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCTGGCGAGCGCCGTGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTACAACCGTCTGGCTGAAATTGCAGGTGAGTACCTGCGTAAAGGTCGTCCCGTCTACGTAGAAGGT
CGTCTGCGCACCCGTAAATGGACAGGTCAGGACGGTCAGGAGCGTTTCACGACCGAAATCATTGCCGAGCAAATGCAAAT
GCTGGGTGGCCGTGACGGTGGTGATATGGGCGGTGGCAGCATGGGTGGTGGCGAATACGGTGGCGGCGGTGGTGCACCAG
CTCCGCAACGTGCTCAGCGCCCAGCGCCTCAACAACAGCAGCAACAACAGGCTCCACGTAATAACGCTCCTATGTCGGAC
AATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.323

100

0.567
  ssb Glaesserella parasuis strain SC1401

48.187

100

0.544
  ssb Neisseria meningitidis MC58

48.066

100

0.509
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.509