Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MGG13_RS11215 Genome accession   NZ_CP092179
Coordinates   2109835..2110350 (-) Length   171 a.a.
NCBI ID   WP_133432496.1    Uniprot ID   A0A4R6BBH7
Organism   Macrococcus brunensis strain 18KM571     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2104835..2115350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGG13_RS11185 (MGG13_11185) - 2105683..2106135 (-) 453 WP_239034907.1 hypothetical protein -
  MGG13_RS11190 (MGG13_11190) - 2106158..2107111 (-) 954 WP_239034908.1 DUF6731 family protein -
  MGG13_RS11195 (MGG13_11195) - 2107296..2107928 (-) 633 WP_239034909.1 hypothetical protein -
  MGG13_RS11200 (MGG13_11200) - 2107975..2108205 (-) 231 WP_239034910.1 hypothetical protein -
  MGG13_RS11205 (MGG13_11205) - 2108298..2109442 (+) 1145 WP_239034911.1 IS3 family transposase -
  MGG13_RS11210 (MGG13_11210) rpsR 2109567..2109809 (-) 243 WP_133417641.1 30S ribosomal protein S18 -
  MGG13_RS11215 (MGG13_11215) ssbA 2109835..2110350 (-) 516 WP_133432496.1 single-stranded DNA-binding protein Machinery gene
  MGG13_RS11220 (MGG13_11220) rpsF 2110372..2110662 (-) 291 WP_133417643.1 30S ribosomal protein S6 -
  MGG13_RS11225 (MGG13_11225) - 2110772..2111095 (-) 324 WP_133432497.1 hypothetical protein -
  MGG13_RS11230 (MGG13_11230) ychF 2111110..2112210 (-) 1101 WP_239034912.1 redox-regulated ATPase YchF -
  MGG13_RS11235 (MGG13_11235) - 2112223..2112417 (-) 195 WP_133432499.1 DUF951 domain-containing protein -
  MGG13_RS11240 (MGG13_11240) - 2112410..2113285 (-) 876 WP_133432500.1 mechanosensitive ion channel family protein -
  MGG13_RS11245 (MGG13_11245) - 2113291..2114136 (-) 846 WP_275416108.1 ParB/RepB/Spo0J family partition protein -
  MGG13_RS11250 (MGG13_11250) - 2114129..2114887 (-) 759 WP_133432502.1 ParA family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18758.35 Da        Isoelectric Point: 4.6856

>NTDB_id=656150 MGG13_RS11215 WP_133432496.1 2109835..2110350(-) (ssbA) [Macrococcus brunensis strain 18KM571]
MINRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFLNCVVFRKQAENVNNYLSKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKGANQNRQDNSSNDYSSYDPGFGGQSQGQNYQANNQTNNQTSSPASNNPFANATG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=656150 MGG13_RS11215 WP_133432496.1 2109835..2110350(-) (ssbA) [Macrococcus brunensis strain 18KM571]
ATGATTAATCGTGTTGTATTAGTAGGTCGTTTAACGAAGGATCCCGAATACAGAGTCACACCCTCAGGCGTATCAGTTGC
TACGTTTACATTAGCGGTTAACCGCACATTTACGAACGCTCAAGGAGAACGCCAGGCGGACTTCTTAAACTGTGTCGTAT
TCCGTAAACAAGCTGAAAACGTCAATAATTACTTAAGTAAAGGTAGTTTAGCTGGTGTGGATGGTAGATTGCAATCTCGC
AGCTATGATAATCAAGAAGGCCGTAAAGTGTATGTGACTGAAGTCGTCTGTGACTCAGTACAGTTCTTAGAACCTAAAGG
TGCTAACCAGAACCGTCAGGACAACTCGTCTAATGACTATTCAAGTTATGACCCGGGATTCGGTGGACAATCACAAGGTC
AGAATTATCAGGCAAATAATCAAACAAATAACCAGACATCATCTCCTGCATCAAACAACCCATTTGCGAATGCAACAGGG
CCGATTGATATCAGTGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R6BBH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.889

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

55.114

100

0.567
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374
  ssb Glaesserella parasuis strain SC1401

34.807

100

0.368