Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OHA48_RS14465 Genome accession   NZ_CP108201
Coordinates   3125575..3126864 (-) Length   429 a.a.
NCBI ID   WP_266514322.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00114     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3120575..3131864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA48_RS14445 (OHA48_14485) - 3122841..3123836 (+) 996 WP_266796783.1 hypothetical protein -
  OHA48_RS14450 (OHA48_14490) - 3123909..3124181 (-) 273 WP_266796785.1 hypothetical protein -
  OHA48_RS14455 (OHA48_14495) - 3124433..3124723 (+) 291 Protein_2868 helix-turn-helix domain-containing protein -
  OHA48_RS14460 (OHA48_14500) - 3124806..3125489 (+) 684 WP_266796787.1 IS630 family transposase -
  OHA48_RS14465 (OHA48_14505) clpX 3125575..3126864 (-) 1290 WP_266514322.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA48_RS14470 (OHA48_14510) clpP 3127043..3127723 (-) 681 WP_323178082.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA48_RS14475 (OHA48_14515) clpP 3127774..3128394 (-) 621 WP_323178083.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA48_RS14480 (OHA48_14520) tig 3128675..3130075 (-) 1401 WP_266796789.1 trigger factor -
  OHA48_RS14495 (OHA48_14535) - 3130710..3130901 (-) 192 WP_266680341.1 hypothetical protein -
  OHA48_RS14500 (OHA48_14540) - 3131241..3131435 (-) 195 WP_266680342.1 hypothetical protein -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 46864.68 Da        Isoelectric Point: 4.8160

>NTDB_id=656123 OHA48_RS14465 WP_266514322.1 3125575..3126864(-) (clpX) [Streptomyces sp. NBC_00114]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGANGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLELQSKDQFGDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVVT
ADVVHSNVNPTLIPRDARNGRGPGEQKTA

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=656123 OHA48_RS14465 WP_266514322.1 3125575..3126864(-) (clpX) [Streptomyces sp. NBC_00114]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCTGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTGCGCTGGGAGGAACTGCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCCCTCTCCGTGGCGGTCTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGCCAACGGCCG
TGACGACGCGATCGAGTTGGCGAAGTCCAACATCCTGCTCCTCGGCCCCACGGGCTCCGGCAAGACCCTCCTGGCCCAGA
CCCTGGCCCGCATGCTGAACGTCCCGTTCGCGATCGCGGACGCCACGGCGCTCACGGAGGCGGGTTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGGAAGAGCGAGAACCCTTCCATCACCCGCGACGTGTCGGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTTGAGGGCACGACGGCCTCGGTCCCGCCCCAGGGCGGCCGAAAGCACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGTGGTGCCTTCTCGGGCCTGGAGAAGATCATCGAGTCCCGTGCGGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCGAAGCTCGAGCTGCAGTCCAAGGATCAGTTCGGGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGCCTCCCGGTCATCACCTCGGTGCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGTAACGCGCTGGTGAAGCAGTACCAACGTCTCTTCGAACTCGACGGTGT
CGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCCCGCGGCCTGC
GCGCCATCATGGAGGAAGTCCTCATGTCCGTGATGTACGAGGTTCCGTCCCGCAAGGACGTCGCCCGAGTCGTCGTCACA
GCGGACGTCGTCCACTCGAACGTGAACCCGACGCTTATTCCGCGGGACGCGCGGAACGGGCGGGGGCCGGGGGAGCAGAA
GACGGCGTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-396)

AAA domain (Cdc48 subfamily) (AAA_2)

(115-312)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

62.935

93.706

0.59
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.015

95.804

0.517