Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | MGG12_RS11775 | Genome accession | NZ_CP092172 |
| Coordinates | 2188059..2188574 (-) | Length | 171 a.a. |
| NCBI ID | WP_133432496.1 | Uniprot ID | A0A4R6BBH7 |
| Organism | Macrococcus brunensis strain 18KM1742 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2164408..2194045 | 2188059..2188574 | within | 0 |
Gene organization within MGE regions
Location: 2164408..2194045
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MGG12_RS11635 (MGG12_11635) | - | 2164408..2164599 (+) | 192 | WP_239047362.1 | hypothetical protein | - |
| MGG12_RS11640 (MGG12_11640) | - | 2164610..2165107 (-) | 498 | WP_239047363.1 | GNAT family N-acetyltransferase | - |
| MGG12_RS11645 (MGG12_11645) | - | 2165189..2165365 (+) | 177 | WP_239034897.1 | hypothetical protein | - |
| MGG12_RS11650 (MGG12_11650) | - | 2165395..2165613 (-) | 219 | WP_239034898.1 | hypothetical protein | - |
| MGG12_RS11655 (MGG12_11655) | spn | 2165825..2166136 (+) | 312 | WP_239047364.1 | SPIN family peroxidase inhibitor | - |
| MGG12_RS11660 (MGG12_11660) | - | 2166466..2167962 (-) | 1497 | WP_239047365.1 | RNA-binding domain-containing protein | - |
| MGG12_RS11665 (MGG12_11665) | - | 2168448..2168684 (-) | 237 | WP_239047366.1 | hypothetical protein | - |
| MGG12_RS11670 (MGG12_11670) | - | 2168930..2169364 (-) | 435 | WP_239047367.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| MGG12_RS11675 (MGG12_11675) | - | 2169361..2169750 (-) | 390 | WP_239047368.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| MGG12_RS11680 (MGG12_11680) | - | 2169816..2170109 (-) | 294 | WP_239047369.1 | hypothetical protein | - |
| MGG12_RS11685 (MGG12_11685) | - | 2170925..2171839 (-) | 915 | WP_239047370.1 | DnaA ATPase domain-containing protein | - |
| MGG12_RS11690 (MGG12_11690) | - | 2171867..2172583 (-) | 717 | WP_239047371.1 | DnaD domain-containing protein | - |
| MGG12_RS11695 (MGG12_11695) | - | 2172819..2173124 (-) | 306 | WP_239047372.1 | hypothetical protein | - |
| MGG12_RS11700 (MGG12_11700) | - | 2173117..2173416 (-) | 300 | WP_239047373.1 | hypothetical protein | - |
| MGG12_RS11705 (MGG12_11705) | - | 2173417..2173602 (-) | 186 | WP_239047374.1 | hypothetical protein | - |
| MGG12_RS11710 (MGG12_11710) | - | 2173723..2173989 (-) | 267 | WP_239047375.1 | helix-turn-helix domain-containing protein | - |
| MGG12_RS11715 (MGG12_11715) | - | 2174004..2174210 (-) | 207 | WP_239047376.1 | helix-turn-helix domain-containing protein | - |
| MGG12_RS11720 (MGG12_11720) | - | 2174379..2175014 (+) | 636 | WP_239047377.1 | helix-turn-helix domain-containing protein | - |
| MGG12_RS12075 | - | 2175159..2175293 (+) | 135 | WP_275422242.1 | hypothetical protein | - |
| MGG12_RS11725 (MGG12_11725) | - | 2175763..2177010 (+) | 1248 | WP_239047378.1 | tyrosine-type recombinase/integrase | - |
| MGG12_RS11730 (MGG12_11730) | guaA | 2177801..2179342 (-) | 1542 | WP_239047379.1 | glutamine-hydrolyzing GMP synthase | - |
| MGG12_RS11735 (MGG12_11735) | guaB | 2179359..2180828 (-) | 1470 | WP_239047380.1 | IMP dehydrogenase | - |
| MGG12_RS11740 (MGG12_11740) | - | 2180860..2182128 (-) | 1269 | WP_239047381.1 | nucleobase:cation symporter-2 family protein | - |
| MGG12_RS11745 (MGG12_11745) | xpt | 2182128..2182706 (-) | 579 | WP_239047382.1 | xanthine phosphoribosyltransferase | - |
| MGG12_RS11750 (MGG12_11750) | - | 2183118..2184257 (+) | 1140 | WP_239047383.1 | DUF2382 domain-containing protein | - |
| MGG12_RS11755 (MGG12_11755) | - | 2184319..2185074 (+) | 756 | WP_239034905.1 | ZIP family metal transporter | - |
| MGG12_RS11765 (MGG12_11765) | - | 2186384..2187601 (-) | 1218 | WP_239047384.1 | carboxylate--amine ligase | - |
| MGG12_RS11770 (MGG12_11770) | rpsR | 2187791..2188033 (-) | 243 | WP_133417641.1 | 30S ribosomal protein S18 | - |
| MGG12_RS11775 (MGG12_11775) | ssbA | 2188059..2188574 (-) | 516 | WP_133432496.1 | single-stranded DNA-binding protein | Machinery gene |
| MGG12_RS11780 (MGG12_11780) | rpsF | 2188596..2188886 (-) | 291 | WP_133417643.1 | 30S ribosomal protein S6 | - |
| MGG12_RS11785 (MGG12_11785) | - | 2188996..2189319 (-) | 324 | WP_133432497.1 | hypothetical protein | - |
| MGG12_RS11790 (MGG12_11790) | ychF | 2189334..2190434 (-) | 1101 | WP_133432498.1 | redox-regulated ATPase YchF | - |
| MGG12_RS11795 (MGG12_11795) | - | 2190447..2190641 (-) | 195 | WP_133432499.1 | DUF951 domain-containing protein | - |
| MGG12_RS11800 (MGG12_11800) | - | 2190634..2191509 (-) | 876 | WP_133432500.1 | mechanosensitive ion channel family protein | - |
| MGG12_RS11805 (MGG12_11805) | - | 2191515..2192360 (-) | 846 | WP_275422243.1 | ParB/RepB/Spo0J family partition protein | - |
| MGG12_RS11810 (MGG12_11810) | - | 2192353..2193111 (-) | 759 | WP_133432502.1 | ParA family protein | - |
| MGG12_RS11815 (MGG12_11815) | noc | 2193203..2194045 (-) | 843 | WP_239034913.1 | nucleoid occlusion protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18758.35 Da Isoelectric Point: 4.6856
>NTDB_id=656121 MGG12_RS11775 WP_133432496.1 2188059..2188574(-) (ssbA) [Macrococcus brunensis strain 18KM1742]
MINRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFLNCVVFRKQAENVNNYLSKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKGANQNRQDNSSNDYSSYDPGFGGQSQGQNYQANNQTNNQTSSPASNNPFANATG
PIDISDDDLPF
MINRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFLNCVVFRKQAENVNNYLSKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKGANQNRQDNSSNDYSSYDPGFGGQSQGQNYQANNQTNNQTSSPASNNPFANATG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=656121 MGG12_RS11775 WP_133432496.1 2188059..2188574(-) (ssbA) [Macrococcus brunensis strain 18KM1742]
ATGATTAATCGTGTTGTATTAGTAGGTCGTTTAACGAAGGATCCCGAATACAGAGTCACACCCTCAGGCGTATCAGTTGC
TACGTTTACATTAGCGGTTAACCGCACATTTACGAACGCTCAAGGAGAACGCCAGGCGGACTTCTTAAACTGTGTCGTAT
TCCGTAAACAAGCTGAAAACGTCAATAACTACTTAAGTAAAGGTAGTTTAGCTGGTGTGGATGGTAGATTGCAATCTCGC
AGCTATGATAATCAAGAAGGCCGTAAAGTGTATGTGACTGAAGTCGTCTGTGACTCAGTACAGTTCTTAGAACCTAAAGG
TGCTAACCAGAACCGTCAGGACAACTCGTCTAATGACTATTCAAGTTATGACCCGGGATTCGGTGGACAATCACAAGGTC
AAAATTATCAGGCAAATAATCAAACAAATAACCAGACATCATCTCCTGCATCAAACAACCCATTTGCGAATGCAACAGGG
CCGATTGATATCAGTGACGATGATTTACCGTTCTAA
ATGATTAATCGTGTTGTATTAGTAGGTCGTTTAACGAAGGATCCCGAATACAGAGTCACACCCTCAGGCGTATCAGTTGC
TACGTTTACATTAGCGGTTAACCGCACATTTACGAACGCTCAAGGAGAACGCCAGGCGGACTTCTTAAACTGTGTCGTAT
TCCGTAAACAAGCTGAAAACGTCAATAACTACTTAAGTAAAGGTAGTTTAGCTGGTGTGGATGGTAGATTGCAATCTCGC
AGCTATGATAATCAAGAAGGCCGTAAAGTGTATGTGACTGAAGTCGTCTGTGACTCAGTACAGTTCTTAGAACCTAAAGG
TGCTAACCAGAACCGTCAGGACAACTCGTCTAATGACTATTCAAGTTATGACCCGGGATTCGGTGGACAATCACAAGGTC
AAAATTATCAGGCAAATAATCAAACAAATAACCAGACATCATCTCCTGCATCAAACAACCCATTTGCGAATGCAACAGGG
CCGATTGATATCAGTGACGATGATTTACCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.889 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.114 |
100 |
0.567 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |
| ssb | Glaesserella parasuis strain SC1401 |
34.807 |
100 |
0.368 |