Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA48_RS13560 Genome accession   NZ_CP108201
Coordinates   2915754..2917487 (+) Length   577 a.a.
NCBI ID   WP_266680036.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00114     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2910754..2922487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA48_RS13525 (OHA48_13550) - 2911279..2912352 (+) 1074 WP_266796605.1 aldo/keto reductase -
  OHA48_RS13530 (OHA48_13555) - 2912333..2913085 (+) 753 Protein_2688 amidohydrolase family protein -
  OHA48_RS13550 (OHA48_13575) - 2913712..2914017 (+) 306 WP_266680032.1 YtxH domain-containing protein -
  OHA48_RS13555 (OHA48_13580) - 2914102..2915544 (+) 1443 WP_266680034.1 FGGY family carbohydrate kinase -
  OHA48_RS13560 (OHA48_13585) rcrP 2915754..2917487 (+) 1734 WP_266680036.1 ABC transporter ATP-binding protein Regulator
  OHA48_RS13565 (OHA48_13590) rcrQ 2917487..2919418 (+) 1932 WP_266680038.1 ABC transporter ATP-binding protein Regulator
  OHA48_RS13570 (OHA48_13595) - 2919583..2920881 (-) 1299 WP_266680040.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62513.83 Da        Isoelectric Point: 6.6978

>NTDB_id=656121 OHA48_RS13560 WP_266680036.1 2915754..2917487(+) (rcrP) [Streptomyces sp. NBC_00114]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNAHIIDQGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYYGA
RTASALGRDLRASVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LIAVVPTLGICVTLIVRKLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFGKSNADLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLKGIDLVAQPGEVTAVIGSTGSGKSTLMGLVPRLFDATDGEVLVDGTNVA
SLEPALLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVQKLEAGLNAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIREADRIVVLDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=656121 OHA48_RS13560 WP_266680036.1 2915754..2917487(+) (rcrP) [Streptomyces sp. NBC_00114]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACAGGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTATCTGCCCACTCTGAACGCCCACATCATCGACCAAGGCGTCGTGAAGGGTGACACCGGCTACA
TCCTCTCCTTCGGCGCCCTGATGATCGGTATCTCGCTGGTCCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGCACCGCCTCCGCACTCGGCCGGGACCTGCGCGCGTCCGTGTTCGACCGGGTGCAGTCCTTCTCCGCGCGGGAGGTCGG
TCATTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGATGTGCCGCTGTCCGGTGTG
CTGATCGCCGTGGTCCCGACGCTGGGCATCTGCGTGACGCTGATCGTGCGGAAGCTGCGGCCGCTGTTCAGGTCCATGCA
GGTGCGCCTGGACACGGTCAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGTGTGATCAGGGCGTTCGTGCGGGACG
AGTACGAGAAGGACCGGTTCGGCAAGTCCAACGCCGACCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTTCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGTGCCGAGCGGATCGAGGAGGTGCTCGGGACGTCCTCCAGCGTGGTGCCG
CCGGTGGCCCCGGTCACCGAGCTGCGCCGGCACGGCCATCTGGAGATCCGGGGTGCCGGGTTCCGCTATCCCGGTGCCGA
GGAGCCCGTGCTCAAGGGGATCGACCTGGTGGCGCAGCCCGGCGAGGTGACCGCCGTCATCGGCTCGACGGGCAGTGGCA
AGTCGACGCTGATGGGGCTCGTCCCGCGCCTGTTCGACGCCACCGACGGCGAGGTGCTCGTCGACGGCACGAACGTGGCG
TCCCTCGAACCGGCGCTGCTGGCGAAGACGGTCGGGCTGGTGCCGCAGAAGCCCTACCTGTTCGCGGGGACGGTCGCGAC
CAACCTGCGCTACGGCAACCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGCAGAAACTCGAAGCCGGGCTCAACGCCCCCATCTCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCCATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTGGACTACGCCACCGA
CGCGGCGCTGCGTGCGGCGCTCGCCCAGGAGACCGCGGAAGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGAGGCGGACCGGATCGTCGTCCTCGACGAGGGACGTGTCGTCGGGACCGGCCGCCATCACGAGCTGATGGCGGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAACTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.21

100

0.385