Detailed information NTG0656041

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHU25_RS20630
• Genome accession: NZ_CP108199
• Coordinates: 4352244..4353530 (-)
• Length: 428 a.a.
• NCBI ID: WP_116512991.1
• Uniprot ID: A0ABV4SEI4
• Organism: Streptomyces sp. NBC_00117
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4347244..4358530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHU25_RS20615 (OHU25_20585)	-	4347608..4348246 (+)	639	WP_327577621.1	hypothetical protein	-
OHU25_RS20620 (OHU25_20590)	-	4348372..4351002 (-)	2631	WP_326713022.1	valine--tRNA ligase	-
OHU25_RS20625 (OHU25_20595)	-	4351188..4352162 (+)	975	WP_405652651.1	hypothetical protein	-
OHU25_RS20630 (OHU25_20600)	clpX	4352244..4353530 (-)	1287	WP_116512991.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHU25_RS20635 (OHU25_20605)	clpP	4353686..4354345 (-)	660	WP_227294656.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU25_RS20640 (OHU25_20610)	clpP	4354399..4355007 (-)	609	WP_266569404.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU25_RS20645 (OHU25_20615)	tig	4355292..4356680 (-)	1389	WP_266564251.1	trigger factor	-
OHU25_RS20660 (OHU25_20630)	-	4357197..4357391 (-)	195	WP_100594330.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46850.55 Da
• Isoelectric Point: 4.7856

>NTDB_id=656041 OHU25_RS20630 WP_116512991.1 4352244..4353530(-) (clpX) [Streptomyces sp. NBC_00117]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELSKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIHSKRELEEKDQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILLEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRRTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
AEAVHSNVNPTLIPRDVRGSGSGEQKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=656041 OHU25_RS20630 WP_116512991.1 4352244..4353530(-) (clpX) [Streptomyces sp. NBC_00117]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAGCTCGCGGAGACGA
GCGAGGTCCGCTGGGAAGAACTTCCCAAGCCTCGCGAGATCTACGAGTTCCTCGAAGGCTATGTCGTCGGCCAGGAGGCC
GCGAAGAAAGCCCTCTCGGTCGCTGTGTACAACCATTACAAGCGGGTTCAGGCCGGTGAGAACGGCGGAGCCCAGGGACG
CGACGACGCGATCGAGCTGTCGAAGTCCAACATCCTGCTCCTGGGCCCCACGGGCTCGGGCAAGACGCTCCTGGCCCAGA
CCCTGGCCCGCATGCTGAACGTTCCGTTCGCCATCGCCGACGCGACGGCGCTCACGGAGGCCGGCTATGTGGGCGAGGAC
GTCGAGAACATCCTCCTGAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTGTCCGGTGAGGGCGTCCAGCAGGCCC
TGCTCAAGATCCTCGAGGGGACCACGGCTTCCGTCCCGCCCCAGGGCGGCCGCAAGCACCCCCATCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGGGCGGGTGC
CAAGGGCATCGGCTTCGGCGCGACGATCCACTCCAAGCGCGAGCTGGAGGAGAAGGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTCCCCGTCATCACCTCGGTCCACAACCTGGACCGC
GAGGCGCTCCTCCAGATCCTCCTGGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTGCGCCGCACAGGCGCGCGCGGCCTGC
GTGCGATCATGGAGGAAGTCCTCCAGTCCGTGATGTACGAGGTCCCCTCCCGCAAGGACGTGGCCCGCGTCGTCATCACG
GCAGAGGCCGTCCACTCGAACGTGAACCCGACGCTGATCCCCCGCGACGTCCGCGGCTCGGGCAGCGGAGAGCAGAAGTC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.433	93.925	0.596
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.479	96.495	0.526