Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L3Q72_RS13245 Genome accession   NZ_CP092106
Coordinates   2976537..2977082 (-) Length   181 a.a.
NCBI ID   WP_275130406.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2971537..2982082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS13235 (L3Q72_13225) - 2973509..2975062 (-) 1554 WP_275130404.1 site-specific integrase -
  L3Q72_RS13240 (L3Q72_13230) - 2975069..2976379 (-) 1311 WP_275130405.1 site-specific integrase -
  L3Q72_RS13245 (L3Q72_13235) ssb 2976537..2977082 (-) 546 WP_275130406.1 single-stranded DNA-binding protein Machinery gene
  L3Q72_RS13250 (L3Q72_13240) - 2977406..2978041 (+) 636 WP_275130407.1 LuxR C-terminal-related transcriptional regulator -
  L3Q72_RS13255 (L3Q72_13245) galU 2978146..2979021 (+) 876 WP_275132115.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  L3Q72_RS13260 (L3Q72_13250) uvrA 2979171..2982014 (+) 2844 WP_275130408.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19878.02 Da        Isoelectric Point: 5.2157

>NTDB_id=655918 L3Q72_RS13245 WP_275130406.1 2976537..2977082(-) (ssb) [Vibrio sp. JC009]
MASRGVNKVILVGNLGGDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGTMQMLGGRGQGQGAPMGGGQQQGGWGQPQQPVQQQPMQQQQPAHQPAPQQA
PQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=655918 L3Q72_RS13245 WP_275130406.1 2976537..2977082(-) (ssb) [Vibrio sp. JC009]
ATGGCAAGCCGTGGAGTAAACAAAGTAATTTTAGTAGGCAACCTTGGGGGAGACCCTGAAGTTCGCTATATGCCAAGCGG
CGGTGCTGTGGCAAATATTACAGTAGCAACTTCTGAAACCTGGCGTGATAAAGCAACAGGTGAACAGCGTGAGAAAACAG
AGTGGCACAGAGTGGCTCTGTTCGGAAAACTGGCTGAAGTAGCGGGTGAATATCTGCGTAAAGGCTCACAGGTATATATT
GAAGGTCAGCTACAGACTCGTAAGTGGCAGGATCAGAGCGGCCAGGACAGATATACAACAGAAGTTGTAGTTCAGGGCTT
TAACGGCACAATGCAGATGCTTGGCGGTCGTGGCCAGGGTCAGGGCGCACCTATGGGTGGCGGTCAGCAGCAGGGCGGTT
GGGGACAGCCTCAGCAGCCGGTTCAGCAGCAGCCAATGCAACAGCAACAGCCTGCGCATCAACCTGCTCCGCAGCAAGCA
CCACAACAGGCGCAGCCGCAATACAATGAGCCACCAATGGACTTTGATGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.108

100

0.823
  ssb Glaesserella parasuis strain SC1401

53.333

100

0.575
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.481
  ssb Neisseria meningitidis MC58

46.961

100

0.47