Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   L3Q72_RS06300 Genome accession   NZ_CP092106
Coordinates   1387543..1388130 (+) Length   195 a.a.
NCBI ID   WP_275131804.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1382543..1393130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS06280 (L3Q72_06275) panP 1382735..1384390 (-) 1656 WP_275131800.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  L3Q72_RS06285 (L3Q72_06280) - 1384516..1385028 (-) 513 WP_275131801.1 hypothetical protein -
  L3Q72_RS06290 (L3Q72_06285) - 1385297..1386208 (-) 912 WP_275131802.1 lysine exporter LysO family protein -
  L3Q72_RS06295 (L3Q72_06290) - 1386245..1387165 (-) 921 WP_275131803.1 HDOD domain-containing protein -
  L3Q72_RS06300 (L3Q72_06295) tfoX 1387543..1388130 (+) 588 WP_275131804.1 TfoX/Sxy family DNA transformation protein Regulator
  L3Q72_RS06305 (L3Q72_06300) - 1388296..1389324 (+) 1029 WP_275131805.1 ABC transporter permease subunit -
  L3Q72_RS06310 (L3Q72_06305) - 1389327..1390370 (+) 1044 WP_275132077.1 ABC transporter permease subunit -
  L3Q72_RS06315 (L3Q72_06310) - 1390390..1392219 (+) 1830 WP_275131806.1 extracellular solute-binding protein -
  L3Q72_RS06320 (L3Q72_06315) - 1392238..1393092 (+) 855 WP_275132078.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22863.12 Da        Isoelectric Point: 5.8024

>NTDB_id=655906 L3Q72_RS06300 WP_275131804.1 1387543..1388130(+) (tfoX) [Vibrio sp. JC009]
MVEQSFYDYAIKFGRYQKRSMFGGMGLFLNDAMYALVIGDEVYIRGGDELDDKFIAKGCDKYRHVKRQTTATVNYYNVTD
LYLNSDTELDSLIQRSIEHSIEYRCFQKSSDNMRLRDLPNMQLTLERMVKKSGIEDVEKFRELGPESAFLRVREEYGKDT
DIRLLWKFAGALDGVHWKLLSETRKKELLDACELM

Nucleotide


Download         Length: 588 bp        

>NTDB_id=655906 L3Q72_RS06300 WP_275131804.1 1387543..1388130(+) (tfoX) [Vibrio sp. JC009]
ATGGTTGAACAATCGTTTTATGACTATGCAATAAAGTTTGGCAGATACCAGAAACGATCGATGTTTGGTGGAATGGGGCT
TTTTTTAAATGATGCCATGTATGCCCTGGTGATAGGAGATGAAGTCTATATACGGGGAGGGGATGAACTTGACGATAAAT
TTATAGCAAAAGGGTGTGATAAATATCGTCATGTAAAGAGGCAGACAACAGCGACAGTAAATTATTATAACGTTACGGAC
CTGTACTTAAATTCAGATACGGAACTGGACTCACTCATTCAGCGTTCAATTGAACACTCGATAGAGTATCGGTGTTTTCA
GAAGTCTTCAGATAATATGCGATTAAGAGATTTGCCAAATATGCAGTTAACCTTAGAGCGTATGGTGAAAAAGTCTGGCA
TTGAGGATGTTGAAAAGTTCAGAGAACTAGGTCCGGAATCTGCTTTTCTAAGAGTACGCGAGGAGTATGGGAAGGATACA
GATATTCGCCTTTTATGGAAATTTGCAGGGGCTCTGGATGGTGTTCACTGGAAACTGCTTAGTGAAACCAGAAAGAAAGA
GCTTCTTGATGCCTGTGAACTGATGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(12-99)

TfoX C-terminal domain (TfoX_C)

(113-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

62.694

98.974

0.621
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

62.694

98.974

0.621
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

62.694

98.974

0.621
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

62.694

98.974

0.621
  tfoX Vibrio cholerae strain A1552

62.694

98.974

0.621
  tfoX Vibrio parahaemolyticus RIMD 2210633

62.694

98.974

0.621
  tfoX Vibrio campbellii strain DS40M4

61.658

98.974

0.61
  tfoX Aliivibrio fischeri ES114

52.66

96.41

0.508