Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JN531_RS03215 Genome accession   NZ_CP092104
Coordinates   683938..684426 (-) Length   162 a.a.
NCBI ID   WP_228347417.1    Uniprot ID   -
Organism   Flagellatimonas centrodinii strain R2A-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 678938..689426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN531_RS03205 (JN531_003205) lptB 679191..679922 (+) 732 WP_228347415.1 LPS export ABC transporter ATP-binding protein -
  JN531_RS03210 (JN531_003210) - 680004..683723 (-) 3720 WP_228347416.1 right-handed parallel beta-helix repeat-containing protein -
  JN531_RS03215 (JN531_003215) ssb 683938..684426 (-) 489 WP_228347417.1 single-stranded DNA-binding protein Machinery gene
  JN531_RS03220 (JN531_003220) - 684443..685621 (-) 1179 WP_228347418.1 MFS transporter -
  JN531_RS03225 (JN531_003225) uvrA 685733..688561 (+) 2829 WP_228347419.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17323.38 Da        Isoelectric Point: 5.2781

>NTDB_id=655873 JN531_RS03215 WP_228347417.1 683938..684426(-) (ssb) [Flagellatimonas centrodinii strain R2A-3]
MARGVNKVILLGNLGQDPEMKYLPSGGAVVNLRLATNDAYKDREGKLVERTEWHSVVMFNKLAEIAGQYLKKGRTVYIEG
TLRTRKWQDKSGQDRYSTEVVANEMQMVGGAGGGGGGSAPMDDDGGYSAPSRSSSAPARGAPAQQSAPPAMDAPFEDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=655873 JN531_RS03215 WP_228347417.1 683938..684426(-) (ssb) [Flagellatimonas centrodinii strain R2A-3]
ATGGCACGTGGAGTCAACAAGGTCATCCTGCTCGGCAATCTGGGCCAGGACCCGGAAATGAAATACCTGCCCTCGGGCGG
CGCGGTGGTGAATCTGCGCCTTGCCACCAACGACGCCTACAAGGATCGCGAGGGCAAGCTCGTTGAGCGCACCGAATGGC
ATTCGGTGGTGATGTTCAACAAGCTGGCGGAAATCGCCGGCCAGTACCTGAAGAAGGGTCGCACGGTCTATATCGAGGGC
ACCCTGCGGACCCGCAAGTGGCAGGACAAGTCCGGTCAGGACCGCTATAGCACCGAGGTCGTGGCCAACGAAATGCAGAT
GGTCGGGGGTGCCGGCGGCGGTGGTGGCGGTAGTGCCCCGATGGACGATGACGGTGGCTACAGCGCGCCGTCGCGCAGCA
GCAGTGCCCCGGCCCGGGGCGCACCGGCACAGCAGAGCGCGCCGCCGGCCATGGATGCCCCGTTCGAAGACGACGACATT
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.747

100

0.593
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.537
  ssb Neisseria meningitidis MC58

49.711

100

0.531
  ssb Glaesserella parasuis strain SC1401

45.556

100

0.506