Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MB380_RS17835 Genome accession   NZ_CP092074
Coordinates   4209951..4210415 (-) Length   154 a.a.
NCBI ID   WP_253529253.1    Uniprot ID   -
Organism   Emticicia sp. 21SJ11W-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4204951..4215415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MB380_RS17825 (MB380_17825) - 4206912..4207529 (-) 618 WP_101728031.1 inorganic pyrophosphatase -
  MB380_RS17830 (MB380_17830) uvrB 4207843..4209870 (+) 2028 WP_253529251.1 excinuclease ABC subunit UvrB -
  MB380_RS17835 (MB380_17835) ssb 4209951..4210415 (-) 465 WP_253529253.1 single-stranded DNA-binding protein Machinery gene
  MB380_RS17840 (MB380_17840) mutY 4210543..4211613 (-) 1071 WP_253529255.1 A/G-specific adenine glycosylase -
  MB380_RS17845 (MB380_17845) - 4211913..4212197 (+) 285 WP_101728035.1 HU family DNA-binding protein -
  MB380_RS17850 (MB380_17850) - 4212270..4213100 (+) 831 WP_143706135.1 tetratricopeptide repeat protein -
  MB380_RS17855 (MB380_17855) - 4213430..4214980 (+) 1551 WP_253529258.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16850.72 Da        Isoelectric Point: 4.8243

>NTDB_id=655803 MB380_RS17835 WP_253529253.1 4209951..4210415(-) (ssb) [Emticicia sp. 21SJ11W-3]
MAGVNKVILLGRLGSDPEVRTLPSGGKVVNFSIATSENYTNRNGEKVEQTEWHRIELWENLANVAEQYLKKGDMAYIEGK
IRTEKWTDQNGQERYTTRVRGTAIQLIGGRSSNAEESDAAPSYGTSNNFAPKPAPVPTPPPIEMAGDGGDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=655803 MB380_RS17835 WP_253529253.1 4209951..4210415(-) (ssb) [Emticicia sp. 21SJ11W-3]
ATGGCTGGAGTAAACAAAGTGATTTTATTAGGAAGATTAGGGTCTGACCCCGAAGTCCGTACGCTTCCAAGCGGTGGTAA
AGTAGTAAACTTTAGCATTGCAACCTCAGAGAATTATACCAACAGAAACGGAGAAAAGGTAGAACAAACAGAATGGCATA
GAATTGAGCTTTGGGAGAATCTGGCAAATGTAGCTGAGCAGTATCTGAAAAAGGGAGACATGGCCTACATTGAAGGGAAA
ATAAGAACCGAAAAATGGACTGACCAGAACGGGCAGGAGAGATATACAACCAGAGTAAGAGGAACGGCTATTCAGCTGAT
AGGTGGCCGAAGCAGTAATGCAGAAGAAAGTGACGCAGCGCCGTCATACGGTACCAGCAACAATTTTGCACCTAAACCTG
CACCTGTACCAACCCCACCACCTATTGAAATGGCCGGCGATGGTGGCGATGATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

41.53

100

0.494
  ssb Vibrio cholerae strain A1552

42.775

100

0.481
  ssb Neisseria meningitidis MC58

40

100

0.455
  ssb Neisseria gonorrhoeae MS11

40

100

0.455