Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HP572_RS16015 Genome accession   NZ_CP092070
Coordinates   3570632..3571174 (+) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium sp. PL64     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3565632..3576174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP572_RS15995 (HP572_15995) vapB 3565797..3566024 (-) 228 WP_095700536.1 type II toxin-antitoxin system VapB family antitoxin -
  HP572_RS16000 (HP572_16000) - 3567113..3567532 (-) 420 WP_240583726.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HP572_RS16005 (HP572_16005) uvrA 3567548..3570382 (-) 2835 WP_240583727.1 excinuclease ABC subunit UvrA -
  HP572_RS16010 (HP572_16010) - 3570457..3570651 (+) 195 WP_182912385.1 hypothetical protein -
  HP572_RS16015 (HP572_16015) ssb 3570632..3571174 (+) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HP572_RS16020 (HP572_16020) - 3571301..3572296 (+) 996 WP_119888516.1 LacI family DNA-binding transcriptional regulator -
  HP572_RS16025 (HP572_16025) - 3572475..3573908 (-) 1434 WP_240583728.1 glycoside hydrolase family 32 protein -
  HP572_RS16030 (HP572_16030) - 3573910..3575175 (-) 1266 WP_240583729.1 MFS transporter -
  HP572_RS16035 (HP572_16035) - 3575511..3575969 (+) 459 WP_240583730.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=655743 HP572_RS16015 WP_039283288.1 3570632..3571174(+) (ssb) [Pectobacterium sp. PL64]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=655743 HP572_RS16015 WP_039283288.1 3570632..3571174(+) (ssb) [Pectobacterium sp. PL64]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACTG
AGTGGCACCGCGTGGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAAGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAACAGCGCCCTGCACAG
AACAGCGCTCCAGCACAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461