Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L8M16_RS02885 Genome accession   NZ_CP091977
Coordinates   600697..601188 (+) Length   163 a.a.
NCBI ID   WP_011238002.1    Uniprot ID   Q5P300
Organism   Aromatoleum aromaticum strain pCyN1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 595697..606188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8M16_RS02875 uvrA 596484..599354 (-) 2871 WP_011238000.1 excinuclease ABC subunit UvrA -
  L8M16_RS02880 - 599494..600675 (+) 1182 WP_041646208.1 MFS transporter -
  L8M16_RS02885 ssb 600697..601188 (+) 492 WP_011238002.1 single-stranded DNA-binding protein Machinery gene
  L8M16_RS02890 - 601242..602387 (-) 1146 WP_011238003.1 MalY/PatB family protein -
  L8M16_RS02895 - 602478..603446 (+) 969 WP_011238004.1 MBL fold metallo-hydrolase -
  L8M16_RS02900 - 603485..604150 (-) 666 WP_011238005.1 tetratricopeptide repeat protein -
  L8M16_RS02905 - 604254..605075 (+) 822 WP_011238006.1 ThiF family adenylyltransferase -
  L8M16_RS02910 - 605072..605458 (+) 387 WP_011238007.1 sirohydrochlorin chelatase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17818.82 Da        Isoelectric Point: 6.9855

>NTDB_id=654813 L8M16_RS02885 WP_011238002.1 600697..601188(+) (ssb) [Aromatoleum aromaticum strain pCyN1]
MASLNKVILIGNLGKDPETRYAPSGDAICNITVATSETWKDKATGEKKEQTEWHRVVFFGRLAEIVAQYLRKGSQIYVEG
RLQTRKWQDKEGQDRYTTEIRGDEMKMLGSRQGAGDASGRQYDAGGYDAPAASRPSPQPAAPAKAPTKSSGAGFGDFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=654813 L8M16_RS02885 WP_011238002.1 600697..601188(+) (ssb) [Aromatoleum aromaticum strain pCyN1]
ATGGCATCCCTGAACAAAGTGATCCTGATCGGCAATCTCGGCAAGGATCCCGAAACACGCTATGCCCCCAGCGGCGATGC
GATCTGCAACATCACGGTGGCGACGAGCGAAACCTGGAAGGACAAGGCGACCGGCGAAAAGAAGGAGCAGACCGAATGGC
ATCGCGTCGTGTTCTTCGGCCGGCTCGCCGAAATCGTGGCGCAGTACCTGCGCAAGGGCAGCCAGATCTACGTCGAAGGC
CGGCTGCAGACGCGCAAGTGGCAGGACAAGGAAGGGCAGGACCGCTACACGACCGAGATCCGCGGCGACGAGATGAAGAT
GCTCGGTTCGCGTCAGGGCGCGGGTGATGCATCGGGTCGCCAGTACGACGCGGGCGGCTACGACGCGCCCGCCGCGTCGC
GCCCGAGCCCGCAACCGGCCGCCCCGGCGAAGGCTCCGACGAAGAGCAGCGGCGCCGGTTTCGGCGATTTCGACGACGAC
ATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5P300

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.249

100

0.614
  ssb Glaesserella parasuis strain SC1401

51.872

100

0.595
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.521
  ssb Neisseria meningitidis MC58

47.458

100

0.515