Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   L3V77_RS07915 Genome accession   NZ_CP091975
Coordinates   1701962..1702549 (+) Length   195 a.a.
NCBI ID   WP_275136516.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1696962..1707549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS07895 (L3V77_07890) panP 1697279..1698922 (-) 1644 WP_275136512.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  L3V77_RS07900 (L3V77_07895) - 1699052..1699564 (-) 513 WP_275136513.1 hypothetical protein -
  L3V77_RS07905 (L3V77_07900) - 1699720..1700625 (-) 906 WP_275136514.1 lysine exporter LysO family protein -
  L3V77_RS07910 (L3V77_07905) - 1700649..1701587 (-) 939 WP_275136515.1 HDOD domain-containing protein -
  L3V77_RS07915 (L3V77_07910) tfoX 1701962..1702549 (+) 588 WP_275136516.1 TfoX/Sxy family DNA transformation protein Regulator
  L3V77_RS07920 (L3V77_07915) - 1702738..1703763 (+) 1026 WP_275136517.1 ABC transporter permease subunit -
  L3V77_RS07925 (L3V77_07920) - 1703768..1704811 (+) 1044 WP_275136719.1 ABC transporter permease subunit -
  L3V77_RS07930 (L3V77_07925) - 1704919..1706721 (+) 1803 WP_275136720.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22370.91 Da        Isoelectric Point: 10.4218

>NTDB_id=654788 L3V77_RS07915 WP_275136516.1 1701962..1702549(+) (tfoX) [Vibrio sp. DW001]
MNNSDFYVYAGKFGVFQKHSMFGGIGLFIQGAMFVLIFGDALYLRGGGRLDADLRALGCNRYRHVKKQAVVTVNYYDIST
LYSRRYLRLDGLIERSIRLSIANKAYRRSVESKRLRDLPNMRLTLERMVKKAGISDVSSFMEFGAAEVYKKVRHQYGENT
DINLLWKFAGAVEGTHWSLLSNKTKKELKRTCDLS

Nucleotide


Download         Length: 588 bp        

>NTDB_id=654788 L3V77_RS07915 WP_275136516.1 1701962..1702549(+) (tfoX) [Vibrio sp. DW001]
ATGAATAATTCAGACTTTTATGTTTACGCAGGAAAATTTGGTGTTTTTCAGAAACACTCTATGTTTGGTGGGATAGGGCT
ATTTATTCAAGGTGCTATGTTTGTTTTGATTTTTGGTGATGCTTTGTATTTGAGGGGAGGAGGGCGTCTAGACGCGGACC
TACGTGCCTTGGGCTGTAATCGGTATCGACATGTTAAAAAACAAGCTGTTGTTACGGTCAACTATTACGATATATCAACA
CTTTATAGCAGAAGGTATTTAAGGCTTGATGGTCTTATTGAACGTTCAATTCGATTGTCGATTGCCAATAAGGCATATCG
ACGCTCCGTCGAGAGTAAACGGCTAAGGGACTTACCCAATATGCGATTAACCTTAGAGAGGATGGTTAAGAAAGCGGGTA
TCTCAGATGTCAGTTCATTTATGGAGTTTGGTGCTGCTGAAGTGTATAAAAAAGTGCGACATCAATATGGTGAAAATACA
GATATTAATCTGTTGTGGAAGTTTGCTGGCGCGGTTGAAGGTACTCACTGGAGCTTATTGAGTAATAAAACGAAAAAGGA
ATTGAAACGTACTTGTGATCTCTCTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(12-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

57.812

98.462

0.569
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

57.812

98.462

0.569
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

57.812

98.462

0.569
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

57.812

98.462

0.569
  tfoX Vibrio cholerae strain A1552

57.812

98.462

0.569
  tfoX Vibrio parahaemolyticus RIMD 2210633

52.85

98.974

0.523
  tfoX Vibrio campbellii strain DS40M4

52.332

98.974

0.518
  tfoX Aliivibrio fischeri ES114

50.273

93.846

0.472